PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_43755
Common NameKK1_045710
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C2H2
Protein Properties Length: 521aa    MW: 57668.2 Da    PI: 6.5046
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_43755genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2218.7e-07276297223
                    EETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     C++Cgk F+r  nL+ H+r H
  C.cajan_43755 276 FCTICGKGFKRDANLRMHMRGH 297
                    6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.29E-5273301No hitNo description
SMARTSM003550.0026275297IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.03275302IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-5276325IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280277297IPR007087Zinc finger, C2H2
SMARTSM0035547323356IPR015880Zinc finger, C2H2-like
SMARTSM0035521361383IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0090502Biological ProcessRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0003676Molecular Functionnucleic acid binding
GO:0004526Molecular Functionribonuclease P activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MDSNGSLRAN TWARSPPLTS AASGLSSDPL SFPGFGLQNN QPKWDGPSSS DFGIRVESPF  60
KEFNQPSQNQ SPLACNSNNE IEFTDQENRH QSESSQTSRV QDWDPSVMLN NLSFLEEKIH  120
QLRDLVHLIV RQKGVRVGQP NELVTQEQQL ITTDLTSIII QLISTAGSLL PSARSSLINT  180
SPLVAQIDQL QGTSVPSGTG ASSSCIQPQN IGGKKVSDQS MQTDLPNNCE MEQNYNMVEH  240
DLKDEEDADD GENLAPGSYE ILQLEKEEIL APHTHFCTIC GKGFKRDANL RMHMRGHGDE  300
YKTAAALAKP HKESGSPKLI KRYSCPYPGC KRNKDHKKFQ PLKTILCVKN HYKRTHCDKS  360
YTCSRCNTKK FSVMADLKTH EKHCGKDKWL CSCGTTFSRK DKLFGHIALF QGHTPAIPLD  420
DNTKGVAEPP IHHSKENTKA GNVNFTFGSN PSDGNEVQNV MDIKGNSDDP INYFSSLNFE  480
PNFGGFNEFT RPLFDDSEGS FSFVMPGSFK SGGESSSDNL L
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_43755
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020207737.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 1
SwissprotQ9C8N51e-172STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLA0A151QSY80.0A0A151QSY8_CAJCA; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
STRINGGLYMA16G27280.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53403254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-165C2H2 family protein
Publications ? help Back to Top
  1. Kobayashi Y, et al.
    Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions.
    Plant Physiol., 2013. 163(1): p. 180-92
    [PMID:23839867]
  2. Yokosho K,Yamaji N,Ma JF
    Global transcriptome analysis of Al-induced genes in an Al-accumulating species, common buckwheat (Fagopyrum esculentum Moench).
    Plant Cell Physiol., 2014. 55(12): p. 2077-91
    [PMID:25273892]
  3. Geng X, et al.
    LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis.
    Plant J., 2017. 90(3): p. 491-504
    [PMID:28181322]
  4. Balzergue C, et al.
    Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation.
    Nat Commun, 2017. 8: p. 15300
    [PMID:28504266]
  5. Pelagio-Flores R,Esparza-Reynoso S,Garnica-Vergara A,López-Bucio J,Herrera-Estrella A
    Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation.
    Front Plant Sci, 2017. 8: p. 822
    [PMID:28567051]
  6. Jiang F, et al.
    Identification and characterization of suppressor mutants of stop1.
    BMC Plant Biol., 2017. 17(1): p. 128
    [PMID:28738784]
  7. Daspute AA, et al.
    Transcriptional Regulation of Aluminum-Tolerance Genes in Higher Plants: Clarifying the Underlying Molecular Mechanisms.
    Front Plant Sci, 2017. 8: p. 1358
    [PMID:28848571]
  8. Sharma A,Wai CM,Ming R,Yu Q
    Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis.
    Genome Biol Evol, 2017. 9(9): p. 2170-2190
    [PMID:28922793]
  9. Zhang Y, et al.
    The Cell Cycle Checkpoint Regulator ATR Is Required for Internal Aluminum Toxicity-Mediated Root Growth Inhibition in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 118
    [PMID:29491872]