PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_43747 | ||||||||
Common Name | KK1_042719 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | TCP | ||||||||
Protein Properties | Length: 366aa MW: 41991.5 Da PI: 7.053 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 136.5 | 2.3e-42 | 115 | 271 | 2 | 135 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssasec.eae 76 +gk+drhski T++g+RdRR+Rls+e+a+rfF Lqd+LGfdk+skt+eWLl+qak +i ++ sss+sec e C.cajan_43747 115 TGKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVEWLLNQAKDEINRVAREkkkdkkknhdddhncgaksgASSSSSECeE-- 208 79**************************************************************888888766666666665544444445542.. PP TCP 77 sssssasnsssg...............kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135 g ++++ ++ k++ k+ +++ lake r++ar+rarertrekmr++ + C.cajan_43747 209 -----------GvssvdevvvsggreqQEERVDKVVKRKVKHCRAFHPLAKECRERARERARERTREKMRTRGV 271 ...........02333344444455543334444455555555668************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.6E-42 | 115 | 268 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.437 | 117 | 175 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.756 | 248 | 265 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MQSQTSSDTF FLSHNGNDQI SYYDPAFFYT RPFTIDSQSK PTSKQENNYH DLPSPPPLSF 60 FHFPSPPFEE TQFFLQQHHD FLLQSHHQAQ PQATEPEPFM EASVRSSDQI PRKRTGKRDR 120 HSKINTARGL RDRRMRLSLE VAKRFFGLQD MLGFDKASKT VEWLLNQAKD EINRVAREKK 180 KDKKKNHDDD HNCGAKSGAS SSSSECEEGV SSVDEVVVSG GREQQEERVD KVVKRKVKHC 240 RAFHPLAKEC RERARERARE RTREKMRTRG VLLSDESTKC GEETNQDLTQ LGSWNPFESG 300 TKTHSVHSSL DVIITEAKEH PKEHLETHVQ AMAHDDDDDD SLVILNKWSP SLIFNGSGFS 360 HEVSLN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 252 | 264 | RARERARERTREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_43747 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029125603.1 | 0.0 | transcription factor DICHOTOMA-like | ||||
Refseq | XP_029125604.1 | 0.0 | transcription factor DICHOTOMA-like | ||||
TrEMBL | A0A151R0V7 | 0.0 | A0A151R0V7_CAJCA; Transcription factor TCP18 | ||||
STRING | XP_007138340.1 | 1e-126 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6564 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.2 | 1e-26 | TCP family protein |