PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_43579

Common Name

KK1_042773

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

G2-like

Protein Properties

Length: 76aa MW: 8295.5 Da PI: 8.5058

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_43579	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.4	1.1e-30	19	69	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 kprl+Wtp+LHerF+eav+qLGG++kAtPkt+l+ m+++gLtl+h+kSHLQ C.cajan_43579 19 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVLKQMGIPGLTLYHLKSHLQ 69 79************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.558	16	76	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-27	17	69	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.48E-15	18	71	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.3E-22	19	71	IPR006447	Myb domain, plants
Pfam	PF00249	4.6E-10	21	69	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 76 aa Download sequence Send to blast
MQGGNGTGDS GLVLSTDAKP RLKWTPDLHE RFIEAVNQLG GADKATPKTV LKQMGIPGLT 60 LYHLKSHLQV TCYFNE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-21	19	69	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-21	19	69	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-21	19	69	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-21	19	69	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-21	19	69	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-21	19	69	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-21	19	69	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-21	19	69	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-21	19	69	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-21	19	69	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-21	19	69	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-21	19	69	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:12008900}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_43579

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	2e-56	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020205825.1	2e-51	myb-related protein 2
Swissprot	Q9FK47	3e-38	PHLA_ARATH; Myb-related protein 1
TrEMBL	A0A151R0U1	7e-50	A0A151R0U1_CAJCA; Myb family transcription factor APL
STRING	GLYMA19G05385.1	8e-41	(Glycine max)
STRING	XP_007151824.1	9e-41	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15413	9	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.5	1e-40	myb-related protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]