PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_43577

Common Name

KK1_042771

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

G2-like

Protein Properties

Length: 314aa MW: 35460 Da PI: 8.1522

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_43577	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.4	6.6e-33	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPkt+l+ m+++gLtl+h+kSHLQkYR+ C.cajan_43577 45 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVLKQMGIPGLTLYHLKSHLQKYRI 99 79****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.311	42	102	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-30	43	100	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.63E-16	44	100	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-23	45	100	IPR006447	Myb domain, plants
Pfam	PF00249	2.4E-10	47	98	IPR001005	SANT/Myb domain
Pfam	PF14379	4.9E-25	146	192	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MYYPQQQQAK NMHALRMHNP TERHMMMQGG NGTGDSGLVL STDAKPRLKW TPDLHERFIE 60 AVNQLGGADK ATPKTVLKQM GIPGLTLYHL KSHLQKYRIS KNMHGQTNTG NNKIVSTTEA 120 TGRMSEASGI QMKHLNIGLQ TNKNSEINEA LHMQIEVQRR LHEQLEVQRH LQLRIEAQGK 180 YLQAVLEKAQ ETLGRQNLGA EGVEAAKVQL SELASRVSSQ CLDSKYSELK ELQALETHNI 240 GLNLRAYNNG PPFVVSKEEN TETGRMPIKL NHEKISQDYR LANFEVKLDL NSHDDNDASS 300 HCQQFDLNGF SWNC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-20	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-20	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-20	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-20	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-20	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-20	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-20	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-20	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-20	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-20	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-20	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-20	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_43577

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020205824.1	0.0	myb-related protein 2 isoform X2
Swissprot	Q9SQQ9	1e-110	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A151R0K8	0.0	A0A151R0K8_CAJCA; Myb family transcription factor APL
STRING	XP_007151824.1	1e-158	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3852	31	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-112	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]