PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_43398
Common NameKK1_045418
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family AP2
Protein Properties Length: 352aa    MW: 40182.7 Da    PI: 7.3219
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_43398genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.62.7e-1245101155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k++g
  C.cajan_43398  45 SIYRGVTRHRWTGRYEAHLWDkHCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKYWG 101
                    57***********************9998888888********************98 PP
2AP251.33e-16144195155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  C.cajan_43398 144 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 195
                    89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-845101IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-1545110IPR016177DNA-binding domain
PROSITE profilePS5103218.66346109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-1246110IPR001471AP2/ERF domain
SMARTSM003804.0E-1946115IPR001471AP2/ERF domain
PRINTSPR003674.0E-64758IPR001471AP2/ERF domain
CDDcd000181.15E-23144205No hitNo description
PfamPF008475.5E-12144195IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-18144205IPR016177DNA-binding domain
PROSITE profilePS5103218.334145203IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17145204IPR001471AP2/ERF domain
SMARTSM003801.2E-24145209IPR001471AP2/ERF domain
PRINTSPR003674.0E-6185205IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGKHQTHKIN NGSTNNNLNA TNTVTTKVKR TRRSVPRDSP PQRSSIYRGV TRHRWTGRYE  60
AHLWDKHCWN ESQNKKGRQG AYDDEEAAAH AYDLAALKYW GQDTILNFPL ATYQNDLKEM  120
EGQSREEYIG SLRRKSSGFS RGVSKYRGVA RHHHNGRWEA RIGRVFGNKY LYLGTYATQE  180
EAATAYDMAA IEYRGLNAVT NFDLSRYIKW LKPNNKTNII NSNLIDPVPN IENDFTPKPN  240
QEKGLNFFRS QEPLSNEEGT LTLTQPRPAA ATSALGLLLQ SAKFKEMMEM TSAADLSAPP  300
PDSELPPCTF PDDIQTYFEC EDSNRYGEGD DIMFSDLNRF MPPMFHCDDF EA
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_43398
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029125997.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-115AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A151UF470.0A0A151UF47_CAJCA; AP2-like ethylene-responsive transcription factor At1g16060 family
STRINGGLYMA04G24010.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-104ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]