PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_43342 | ||||||||
Common Name | KK1_043383 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | MYB | ||||||||
Protein Properties | Length: 294aa MW: 33332.9 Da PI: 8.2147 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.7 | 1.3e-18 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l++++ + G g+W+t +++ g++R++k+c++rw +yl C.cajan_43342 15 KGPWTPEEDEKLIEYISKQGHGSWRTLPKRAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.9 | 4.8e-18 | 68 | 111 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+eE+ l+++++ lG++ W++Ia++++ gRt++++k++w++ C.cajan_43342 68 RGKFTEEEERLIINLHSVLGNK-WSKIAAHLP-GRTDNEIKNYWNT 111 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.622 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.02E-32 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-15 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-17 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-25 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.82E-11 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 28.118 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 4.6E-17 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-16 | 68 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-27 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.36E-13 | 70 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MGRSPCCEES SSVKKGPWTP EEDEKLIEYI SKQGHGSWRT LPKRAGLNRC GKSCRLRWTN 60 YLRPDIKRGK FTEEEERLII NLHSVLGNKW SKIAAHLPGR TDNEIKNYWN TSIRKKLLKM 120 GIDPETHKPR TDFNHLMNLS QLLGMSNLSS AMNTTWGNNN PFGMPADITQ LAKIQLLQSL 180 LQIMNSNSFV NMGNPNLLVG NPNLNPLFLN GLNPLQPKEP VVLSGSEEYA NHVNEEPLPA 240 LVVSSPRMGT FNQMNNGCNM AQTFTKSPSN TIFDDWEKFL EDETTGSYWK EILE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-32 | 15 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_43342 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 1e-127 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020206207.1 | 0.0 | transcription factor MYB41 | ||||
Swissprot | Q8GWP0 | 3e-82 | MYB39_ARATH; Transcription factor MYB39 | ||||
TrEMBL | A0A151QZ91 | 0.0 | A0A151QZ91_CAJCA; Transcription factor MYB39 | ||||
STRING | GLYMA09G33870.1 | 1e-167 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF402 | 34 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 1e-87 | myb domain protein 9 |