PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_42908
Common NameKK1_041103
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family LSD
Protein Properties Length: 127aa    MW: 14021.4 Da    PI: 8.4957
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_42908genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD141.52.2e-13529125
        zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                   C+gCr++L YP+GA++V+Ca+C+t+
  C.cajan_42908  5 CNGCRNILVYPLGASNVCCAICNTI 29
                   ***********************97 PP
2zf-LSD127.55.3e-094468125
        zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                   CggCrt L YPr A sV C+ C+++
  C.cajan_42908 44 CGGCRTFLVYPRRAASVTCPYCHAI 68
                   ***********************97 PP
3zf-LSD1521.1e-1682106125
        zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                    Cg+Crt+L+YP+GApsV+Ca+C+++
  C.cajan_42908  82 CGNCRTTLMYPYGAPSVKCAICHFI 106
                    ***********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.3E-11432IPR005735Zinc finger, LSD1-type
PfamPF069433.0E-11529IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010537.2E-114170IPR005735Zinc finger, LSD1-type
PfamPF069432.1E-74468IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010535.6E-1379108IPR005735Zinc finger, LSD1-type
PfamPF069432.9E-1582106IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MRSVCNGCRN ILVYPLGASN VCCAICNTIN SVPPPRMEMS QLHCGGCRTF LVYPRRAASV  60
TCPYCHAINL APELNQVSHV HCGNCRTTLM YPYGAPSVKC AICHFITNVT VSIHSYNLFN  120
FTSFRSI
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_42908
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020204593.12e-75protein LSD1
SwissprotQ0J7V95e-45LSD1_ORYSJ; Protein LSD1
TrEMBLA0A151R5P21e-86A0A151R5P2_CAJCA; Uncharacterized protein
STRINGLus100080662e-54(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40273361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.13e-47lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]