PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | C.cajan_42339 | ||||||||
Common Name | KK1_046391 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 79aa MW: 9466.23 Da PI: 9.1048 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.1 | 5.3e-15 | 1 | 40 | 8 | 48 |
HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 Ed l+++vk++G ++W+ I+++++ gR +kqc++rw+++l C.cajan_42339 1 EDACLIELVKKYGIKRWSIISKYLP-GRIGKQCRERWNNHL 40 8999*********************.*************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 9.57E-12 | 1 | 40 | No hit | No description |
Pfam | PF13921 | 2.6E-15 | 1 | 56 | No hit | No description |
SuperFamily | SSF46689 | 2.23E-18 | 1 | 58 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.565 | 1 | 44 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-25 | 1 | 58 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-8 | 1 | 42 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 4.17 | 41 | 61 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 79 aa Download sequence Send to blast |
EDACLIELVK KYGIKRWSII SKYLPGRIGK QCRERWNNHL DPTIKKDAWT EEEEKYLLSV 60 LVVVVVFYFI LNKLSYMML |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-23 | 1 | 74 | 14 | 87 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | C.cajan_42339 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020208100.1 | 3e-40 | chitinase-like protein PB1E7.04c isoform X2 | ||||
Swissprot | Q0JHU7 | 2e-24 | MB3R2_ORYSJ; Transcription factor MYB3R-2 | ||||
TrEMBL | A0A151QRE8 | 1e-50 | A0A151QRE8_CAJCA; Myb-related protein 3R-1 (Fragment) | ||||
STRING | VIT_02s0025g04220.t01 | 5e-26 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4129 | 31 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G32730.2 | 1e-25 | Homeodomain-like protein |
Publications ? help Back to Top | |||
---|---|---|---|
|