PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_41905
Common NameKK1_042413
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family ERF
Protein Properties Length: 218aa    MW: 24651.8 Da    PI: 6.8835
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_41905genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.5e-1851101155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    + y+GVr++  + +Wv+e+r+p   +k++r++lg+f t+e+Aa+a++ a+ +l+g
  C.cajan_41905  51 PVYRGVRRRN-SDKWVCEVREP---NKKTRIWLGTFPTPEMAARAHDVAAMALRG 101
                    68*****888.8******9998...347*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.8E-1451101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-2752104IPR001471AP2/ERF domain
SMARTSM003805.3E-2452112IPR001471AP2/ERF domain
PROSITE profilePS5103219.83652110IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-1852104IPR016177DNA-binding domain
CDDcd000182.20E-2453105No hitNo description
PRINTSPR003676.8E-85364IPR001471AP2/ERF domain
PRINTSPR003676.8E-87591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MFTLSHSSDG YHASSGGSRG GVAFPGEDVR LAVRHPKKRA GRKKFQETRH PVYRGVRRRN  60
SDKWVCEVRE PNKKTRIWLG TFPTPEMAAR AHDVAAMALR GRCASPATAE AKDIQKAAAQ  120
AAEAFRPDQT LKRIDQTLKS IDMREEHVEV TSMTTITTTM RDQQGMFYMD EEEGQELDMP  180
ELLRNMVLMS PTHCLGYEYE DADLEAQDAE VSLWSFSI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:16244146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_41905
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:9735350, ECO:0000269|PubMed:9952441}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353843e-85AC235384.1 Glycine max strain Williams 82 clone GM_WBb0112F14, complete sequence.
GenBankAF3707353e-85AF370735.1 Glycine max clone 39 CBF-like protein mRNA, complete cds.
GenBankAY8027793e-85AY802779.1 Glycine soja drought responsive element binding protein mRNA, complete cds.
GenBankEU3653763e-85EU365376.1 Glycine max cultivar Stout CRT binding factor 1 and PERLD1 genes, complete cds.
GenBankFJ3932203e-85FJ393220.1 Glycine max CRT/DRE binding factor (CBF) mRNA, complete cds.
GenBankFJ9653423e-85FJ965342.1 Glycine max cultivar Jackson drought responsive element binding protein 1 (DREB1) gene, complete cds.
GenBankHE6476873e-85HE647687.1 Glycine max dreb1 gene for drought responsive element binding protein 1, cultivar Cuclong-Phubinh.
GenBankHE6476883e-85HE647688.1 Glycine max dreb1 gene for drought responsive element binding protein 1, cultivar VangNganSon.
GenBankHE6476893e-85HE647689.1 Glycine max dreb1 gene for drought responsive element binding protein 1, cultivar Cucvang-YenSon.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029125550.11e-161dehydration-responsive element-binding protein 1A
SwissprotQ9SYS65e-52DRE1C_ARATH; Dehydration-responsive element-binding protein 1C
TrEMBLA0A151R1U41e-163A0A151R1U4_CAJCA; Dehydration-responsive element-binding protein 1C
STRINGGLYMA09G27180.21e-104(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.16e-37C-repeat/DRE binding factor 2
Publications ? help Back to Top
  1. Keily J, et al.
    Model selection reveals control of cold signalling by evening-phased components of the plant circadian clock.
    Plant J., 2013. 76(2): p. 247-57
    [PMID:23909712]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Shi H, et al.
    The Cysteine2/Histidine2-Type Transcription Factor ZINC FINGER OF ARABIDOPSIS THALIANA6 Modulates Biotic and Abiotic Stress Responses by Activating Salicylic Acid-Related Genes and C-REPEAT-BINDING FACTOR Genes in Arabidopsis.
    Plant Physiol., 2014. 165(3): p. 1367-1379
    [PMID:24834923]
  4. Oakley CG,Ågren J,Atchison RA,Schemske DW
    QTL mapping of freezing tolerance: links to fitness and adaptive trade-offs.
    Mol. Ecol., 2014. 23(17): p. 4304-15
    [PMID:25039860]
  5. Miyazaki Y,Abe H,Takase T,Kobayashi M,Kiyosue T
    Overexpression of LOV KELCH protein 2 confers dehydration tolerance and is associated with enhanced expression of dehydration-inducible genes in Arabidopsis thaliana.
    Plant Cell Rep., 2015. 34(5): p. 843-52
    [PMID:25627253]
  6. Park S, et al.
    Regulation of the Arabidopsis CBF regulon by a complex low-temperature regulatory network.
    Plant J., 2015. 82(2): p. 193-207
    [PMID:25736223]
  7. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]
  8. Li Y,Xu B,Du Q,Zhang D
    Transcript abundance patterns of Populus C-repeat binding factor2 orthologs and genetic association of PsCBF2 allelic variation with physiological and biochemical traits in response to abiotic stress.
    Planta, 2015. 242(1): p. 295-312
    [PMID:25916311]
  9. Shi H,Qian Y,Tan DX,Reiter RJ,He C
    Melatonin induces the transcripts of CBF/DREB1s and their involvement in both abiotic and biotic stresses in Arabidopsis.
    J. Pineal Res., 2015. 59(3): p. 334-42
    [PMID:26182834]
  10. Wang CL,Zhang SC,Qi SD,Zheng CC,Wu CA
    Delayed germination of Arabidopsis seeds under chilling stress by overexpressing an abiotic stress inducible GhTPS11.
    Gene, 2016. 575(2 Pt 1): p. 206-12
    [PMID:26325072]
  11. Gehan MA, et al.
    Natural variation in the C-repeat binding factor cold response pathway correlates with local adaptation of Arabidopsis ecotypes.
    Plant J., 2015. 84(4): p. 682-93
    [PMID:26369909]
  12. Su F, et al.
    Burkholderia phytofirmans PsJN reduces impact of freezing temperatures on photosynthesis in Arabidopsis thaliana.
    Front Plant Sci, 2015. 6: p. 810
    [PMID:26483823]
  13. Chan Z, et al.
    RDM4 modulates cold stress resistance in Arabidopsis partially through the CBF-mediated pathway.
    New Phytol., 2016. 209(4): p. 1527-39
    [PMID:26522658]
  14. Wu J, et al.
    Overexpression of Muscadinia rotundifolia CBF2 gene enhances biotic and abiotic stress tolerance in Arabidopsis.
    Protoplasma, 2017. 254(1): p. 239-251
    [PMID:26795343]
  15. Gao S, et al.
    A cotton miRNA is involved in regulation of plant response to salt stress.
    Sci Rep, 2016. 6: p. 19736
    [PMID:26813144]
  16. Shi H,Wei Y,He C
    Melatonin-induced CBF/DREB1s are essential for diurnal change of disease resistance and CCA1 expression in Arabidopsis.
    Plant Physiol. Biochem., 2016. 100: p. 150-155
    [PMID:26828406]
  17. Norén L, et al.
    Circadian and Plastid Signaling Pathways Are Integrated to Ensure Correct Expression of the CBF and COR Genes during Photoperiodic Growth.
    Plant Physiol., 2016. 171(2): p. 1392-406
    [PMID:27208227]
  18. Zhao C, et al.
    Mutational Evidence for the Critical Role of CBF Transcription Factors in Cold Acclimation in Arabidopsis.
    Plant Physiol., 2016. 171(4): p. 2744-59
    [PMID:27252305]
  19. Jia Y, et al.
    The cbfs triple mutants reveal the essential functions of CBFs in cold acclimation and allow the definition of CBF regulons in Arabidopsis.
    New Phytol., 2016. 212(2): p. 345-53
    [PMID:27353960]
  20. Zhao C,Zhu JK
    The broad roles of CBF genes: From development to abiotic stress.
    Plant Signal Behav, 2016. 11(8): p. e1215794
    [PMID:27472659]
  21. Bolt S,Zuther E,Zintl S,Hincha DK,Schmülling T
    ERF105 is a transcription factor gene of Arabidopsis thaliana required for freezing tolerance and cold acclimation.
    Plant Cell Environ., 2017. 40(1): p. 108-120
    [PMID:27723941]
  22. Shi Y, et al.
    The precise regulation of different COR genes by individual CBF transcription factors in Arabidopsis thaliana.
    J Integr Plant Biol, 2017. 59(2): p. 118-133
    [PMID:28009483]
  23. Li H, et al.
    BZR1 Positively Regulates Freezing Tolerance via CBF-Dependent and CBF-Independent Pathways in Arabidopsis.
    Mol Plant, 2017. 10(4): p. 545-559
    [PMID:28089951]
  24. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  25. Li A, et al.
    Transcriptome Profiling Reveals the Negative Regulation of Multiple Plant Hormone Signaling Pathways Elicited by Overexpression of C-Repeat Binding Factors.
    Front Plant Sci, 2017. 8: p. 1647
    [PMID:28983312]
  26. Cho S, et al.
    Accession-Dependent CBF Gene Deletion by CRISPR/Cas System in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 1910
    [PMID:29163623]
  27. Beine-Golovchuk O, et al.
    Plant Temperature Acclimation and Growth Rely on Cytosolic Ribosome Biogenesis Factor Homologs.
    Plant Physiol., 2018. 176(3): p. 2251-2276
    [PMID:29382692]
  28. Park S,Gilmour SJ,Grumet R,Thomashow MF
    CBF-dependent and CBF-independent regulatory pathways contribute to the differences in freezing tolerance and cold-regulated gene expression of two Arabidopsis ecotypes locally adapted to sites in Sweden and Italy.
    PLoS ONE, 2018. 13(12): p. e0207723
    [PMID:30517145]