PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_41840
Common NameKK1_039354
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family SBP
Protein Properties Length: 215aa    MW: 23622.4 Da    PI: 9.4303
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_41840genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.36.9e-41127203177
                    --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
            SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                    +CqvegC++ l +akeyhrrh+vC++hskap+v+v gleqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk++
  C.cajan_41840 127 RCQVEGCHVALVNAKEYHRRHRVCDMHSKAPKVVVLGLEQRFCQQCSRFHVVSEFDDAKRSCRRRLAGHNERRRKSS 203
                    6**************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.6E-34124189IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.351125202IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.27E-38126204IPR004333Transcription factor, SBP-box
PfamPF031109.3E-32128201IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MEFGDNNMLG LNNHTKEGNG NTNINNNTFV NVWYSSWEPT MPTSSNSTLI NNTLHAAAVA  60
GGGADPHLTC LHLGKRHYLE DDGGVGATPL GNRHVCGGGG GFALEGNDKR ARGCYGGKTA  120
PFAMVPRCQV EGCHVALVNA KEYHRRHRVC DMHSKAPKVV VLGLEQRFCQ QCSRFHVVSE  180
FDDAKRSCRR RLAGHNERRR KSSHLSVTRN SRQGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-301282011184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_41840
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150429e-58AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029125153.11e-131LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 7
SwissprotQ7XT422e-40SPL7_ORYSJ; Squamosa promoter-binding-like protein 7
TrEMBLA0A151RA191e-159A0A151RA19_CAJCA; Squamosa promoter-binding-like protein 7
STRINGGLYMA07G14641.12e-97(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96132738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27370.46e-38squamosa promoter binding protein-like 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]