PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_41760

Common Name

KK1_040123

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

ZF-HD

Protein Properties

Length: 302aa MW: 32657.2 Da PI: 9.4086

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_41760	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	72.1	8.7e-23	68	119	3	53
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFH 53 +v+YkeClkNhAa+lGgha+DGCgEfm+s+ ++ +++++lkCaA + H +H C.cajan_41760 68 AVTYKECLKNHAANLGGHALDGCGEFMQSPAATaADPTSLKCAAYQPHHRHH 119 689************************999999********9998777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	5.0E-15	69	111	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	7.0E-18	69	119	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.6E-20	70	119	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	20.741	71	122	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	1.3E-30	166	238	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.79E-19	167	237	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	9.8E-27	176	233	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MDITPTTTIS NTPSATKSPE NHETETPSRI NTPTPTPTPP RTATTKTLSF SNGVLKRHHH 60 HHPSIPAAVT YKECLKNHAA NLGGHALDGC GEFMQSPAAT AADPTSLKCA AYQPHHRHHP 120 PPPFHAATRS PNSASPPPIS SSYYPSAPHM LLALSAGLAA PPESTAAPSP LASHSRKRFR 180 TKFSQEQKEK MHKFAEKVGW KMQKRDEDLI HDFCNEVGVD RSVLKVWMHN NKNSLAKKDT 240 NINPINTVSI SNNDNANGSD KSFEVPTNND AVAVPEDRSQ DPTRNHRYGG ANVGANGSSS 300 SS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	8e-22	175	234	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_41760

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020203786.1	1e-173	zinc-finger homeodomain protein 10
Swissprot	Q9LHF0	2e-58	ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBL	A0A151R7L2	0.0	A0A151R7L2_CAJCA; ZF-HD homeobox protein At4g24660 family
STRING	XP_007139577.1	8e-98	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1979	31	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39760.1	2e-32	homeobox protein 23

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]