PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_41561
Common NameKK1_045691
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HD-ZIP
Protein Properties Length: 759aa    MW: 84277.4 Da    PI: 6.2236
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_41561genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.22.2e-21106161156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    r+k +++t++q++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  C.cajan_41561 106 RKKYHRHTADQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 161
                    7999************************************************9877 PP
2START228.32.3e-712774984206
                    HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
          START   4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                    ++a++el+k+a+++ep+W +s     e++n+de++++f+ +++      +s+ea+r++gvv+ +l++lv+++ld++ qW+e+++    ka+t++vi
  C.cajan_41561 277 NQAMEELIKMATVGEPLWLRSFetgrEILNYDEYVKEFAVENSssgkpkRSIEASRDTGVVFVDLPRLVQSFLDVN-QWKEMFPclisKAATVDVI 371
                    789******************99***************9888899*******************************.******************* PP

                    CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--S CS
          START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkg 174
                    ++g      ga+qlm+ae q+l+p+vp R+++fvR+++ql+a++w+ivdvS+d  +++  ++s+v+++++pSg++ie+ksngh+kv+wveh ++++
  C.cajan_41561 372 CNGegpnrnGAVQLMFAEVQMLTPMVPtREVYFVRFCKQLSAEQWAIVDVSIDKVEDNI-DASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQK 466
                    *********************************************************98.9*********************************** PP

                    SXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
          START 175 rlphwllrslvksglaegaktwvatlqrqcek 206
                    + +h+++r +v+sgla+ga++w atlq qce+
  C.cajan_41561 467 SAVHSMYRTIVNSGLAFGARHWIATLQLQCER 498
                    ******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-2292157IPR009057Homeodomain-like
SuperFamilySSF466892.26E-2095164IPR009057Homeodomain-like
PROSITE profilePS5007118.091103163IPR001356Homeobox domain
SMARTSM003898.6E-19105167IPR001356Homeobox domain
PfamPF000461.0E-18106161IPR001356Homeobox domain
CDDcd000864.95E-17110161No hitNo description
PROSITE patternPS000270138161IPR017970Homeobox, conserved site
PROSITE profilePS5084839.011265501IPR002913START domain
SuperFamilySSF559618.79E-32267498No hitNo description
CDDcd088753.90E-111269497No hitNo description
SMARTSM002345.2E-72274498IPR002913START domain
PfamPF018522.3E-56276498IPR002913START domain
Gene3DG3DSA:3.30.530.202.6E-4326493IPR023393START-like domain
SuperFamilySSF559618.24E-14528744No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 759 aa     Download sequence    Send to blast
MGADMSNNNN PPPTSHAKDF FASPALSLSL AGIFRHAGVA PPHEATTSNM EVEDGEEGSG  60
GGERLLEEIS SENSGPTRSR SEDDFEGEAE HDDDDADADK NKKKKRKKYH RHTADQIREM  120
EALFKESPHP DEKQRQQLSK QLGLAPRQVK FWFQNRRTQI KAIQERHENS LLKSEIEKLK  180
EKNKTLRETI NKACCPHCGV PTTSRDGAMP TEEQQLRIEN AKLKAEVEKL RAALGKYAPG  240
TTSPSCSSGH DQENRSSLDF YTGIFGLDKS RIMDVVNQAM EELIKMATVG EPLWLRSFET  300
GREILNYDEY VKEFAVENSS SGKPKRSIEA SRDTGVVFVD LPRLVQSFLD VNQWKEMFPC  360
LISKAATVDV ICNGEGPNRN GAVQLMFAEV QMLTPMVPTR EVYFVRFCKQ LSAEQWAIVD  420
VSIDKVEDNI DASLVKCRKR PSGCIIEDKS NGHCKVIWVE HLECQKSAVH SMYRTIVNSG  480
LAFGARHWIA TLQLQCERLV FFMATNVPMK DSTGVATLAG RKSILKLAQR MTWSFCHAIG  540
ASSFHTWTKV TSKTGEDIRI SSRKNLNDPG EPLGLILCAV CSVWLPVAPN VLFDFLRDEA  600
RRTEWDIMSS GGTVQSIANL AKGQDRGNAV SIQTIKSNEN SVWILQDSCT NPYESMVVYA  660
SVDITGIQSV MTGCDSSNLA ILPSGFSIIP DGLESRPLVI TSRQEEKNTE GGSLFTMAFQ  720
ILTNASPTAK LTMESVDSVN TLVSCTLRNI RTSLQCEDG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101106KKKKRK
2101107KKKKRKK
3103107KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_41561
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311710.0KT031171.1 Glycine max clone HN_CCL_120 homeodomain/HOMEOBOX transcription factor (Glyma13g43350.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020207725.10.0homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A151QT100.0A0A151QT10_CAJCA; Homeobox-leucine zipper protein GLABRA 2
STRINGGLYMA15G01960.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47143352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]