PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | C.cajan_41281 | ||||||||
Common Name | KK1_039408 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 226aa MW: 25821.9 Da PI: 6.701 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.7 | 1.1e-19 | 21 | 74 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ ++t++q+ +Le++F++n+++ e++ +LA++lg++ rqV +W+qN+Ra++k C.cajan_41281 21 NKKRLTEDQVAILEKCFASNMKLEPEQKFHLANQLGVPPRQVAIWYQNKRARWK 74 56789************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 110.8 | 9.3e-36 | 21 | 112 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+rl+++qv++LE++F ++ kLepe+K +la++Lg+ prqva+W+qn+RAR+kt++lE+d+ +L+++++++++e+++Le++ve+L+ elk+ C.cajan_41281 21 NKKRLTEDQVAILEKCFASNMKLEPEQKFHLANQLGVPPRQVAIWYQNKRARWKTQNLEVDHGVLQAKLENVMAEKKQLERDVERLKVELKK 112 79***************9999******************************************************************99987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.38E-18 | 13 | 78 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.115 | 16 | 76 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.2E-17 | 18 | 80 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.93E-16 | 19 | 77 | No hit | No description |
Pfam | PF00046 | 4.7E-17 | 21 | 74 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-18 | 23 | 80 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 51 | 74 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009646 | Biological Process | response to absence of light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 226 aa Download sequence Send to blast |
MGDLKFSFKT QDHVHQRAKH NKKRLTEDQV AILEKCFASN MKLEPEQKFH LANQLGVPPR 60 QVAIWYQNKR ARWKTQNLEV DHGVLQAKLE NVMAEKKQLE RDVERLKVEL KKAQEMLLIG 120 NAKGGDCSLV CKNRTHYQED LQQLTHFIQS SELDPFDGAD HSNTNNNGSC EFSTSFEEGG 180 SSGVLDDGTH HHHECWQSGE VMQAEELYAY FMGANFGSGL LHEKRA |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | C.cajan_41281 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_029125164.1 | 1e-170 | homeobox-leucine zipper protein ATHB-7 | ||||
TrEMBL | A0A151R9X7 | 1e-169 | A0A151R9X7_CAJCA; Homeobox-leucine zipper protein ATHB-52 | ||||
STRING | GLYMA12G18720.1 | 1e-100 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11011 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G53980.1 | 2e-34 | homeobox protein 52 |