PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_41268
Common NameKK1_037876
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family TCP
Protein Properties Length: 379aa    MW: 41291.3 Da    PI: 7.08
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_41268genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.71.5e-3641143289
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..ssssasec..eaesssssasnsssg..... 88 
                    +g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LGfd++sk+++WL+++ak+ai++l+++    ++as++   +++++   +n+s +     
  C.cajan_41268  41 TGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAKAAIDQLAELppW-NPASSMqpPQQQEVIHRENKSLAmedrk 135
                    79**************************************************************752.3333333334444444443333355555 PP

            TCP  89 .......k 89 
                           +
  C.cajan_41268 136 dsiiafgS 143
                    55555532 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-3241158IPR005333Transcription factor, TCP
PROSITE profilePS5136932.91743101IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MEESHHHHHR QAPTPSRAAM RGGSGNGEIV EVQGGHIVRS TGRKDRHSKV CTAKGPRDRR  60
VRLAAHTAIQ FYDVQDRLGF DRPSKAVDWL IKKAKAAIDQ LAELPPWNPA SSMQPPQQQE  120
VIHRENKSLA MEDRKDSIIA FGSREFSHQL ESENGNNMSN KYNSGSGFLP ASLDTDNIAE  180
TIKSFFPVEA TTTSFQSYPP APSDLGQQDL RLSLQSFQDP IMLHHQPQSH HEPVLFAGTA  240
AAALGFDGGS AWSEHQQHHS EEQRLLYSGN SGHGGGFVFN SPAPAFGQFF SQRGPLQSSN  300
TPSVRAWIDP SVDHHHHHHH HYLSPLIHQG SVAGGGGGGG FSAAAGGFSG FRIPARIQGE  360
EEHDGLSDKP SSASSDSRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-2048101154Putative transcription factor PCF6
5zkt_B5e-2048101154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00203DAPTransfer from AT1G53230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_41268
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201945.10.0transcription factor TCP3
SwissprotQ9MAH81e-105TCP3_ARATH; Transcription factor TCP3
TrEMBLA0A151RDP60.0A0A151RDP6_CAJCA; Transcription factor TCP3
STRINGXP_007133163.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.12e-84TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3
Publications ? help Back to Top
  1. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  2. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  3. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]