PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_41268 | ||||||||
Common Name | KK1_037876 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | TCP | ||||||||
Protein Properties | Length: 379aa MW: 41291.3 Da PI: 7.08 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 117.7 | 1.5e-36 | 41 | 143 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..ssssasec..eaesssssasnsssg..... 88 +g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LGfd++sk+++WL+++ak+ai++l+++ ++as++ +++++ +n+s + C.cajan_41268 41 TGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAKAAIDQLAELppW-NPASSMqpPQQQEVIHRENKSLAmedrk 135 79**************************************************************752.3333333334444444443333355555 PP TCP 89 .......k 89 + C.cajan_41268 136 dsiiafgS 143 55555532 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.7E-32 | 41 | 158 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.917 | 43 | 101 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MEESHHHHHR QAPTPSRAAM RGGSGNGEIV EVQGGHIVRS TGRKDRHSKV CTAKGPRDRR 60 VRLAAHTAIQ FYDVQDRLGF DRPSKAVDWL IKKAKAAIDQ LAELPPWNPA SSMQPPQQQE 120 VIHRENKSLA MEDRKDSIIA FGSREFSHQL ESENGNNMSN KYNSGSGFLP ASLDTDNIAE 180 TIKSFFPVEA TTTSFQSYPP APSDLGQQDL RLSLQSFQDP IMLHHQPQSH HEPVLFAGTA 240 AAALGFDGGS AWSEHQQHHS EEQRLLYSGN SGHGGGFVFN SPAPAFGQFF SQRGPLQSSN 300 TPSVRAWIDP SVDHHHHHHH HYLSPLIHQG SVAGGGGGGG FSAAAGGFSG FRIPARIQGE 360 EEHDGLSDKP SSASSDSRH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-20 | 48 | 101 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 5e-20 | 48 | 101 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00203 | DAP | Transfer from AT1G53230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_41268 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020201945.1 | 0.0 | transcription factor TCP3 | ||||
Swissprot | Q9MAH8 | 1e-105 | TCP3_ARATH; Transcription factor TCP3 | ||||
TrEMBL | A0A151RDP6 | 0.0 | A0A151RDP6_CAJCA; Transcription factor TCP3 | ||||
STRING | XP_007133163.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53230.1 | 2e-84 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 |
Publications ? help Back to Top | |||
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