PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | C.cajan_40927 | ||||||||
Common Name | KK1_041316 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 231aa MW: 26050.9 Da PI: 10.2331 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.2 | 7.1e-14 | 49 | 95 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR++i + f L l+P + kK++Ka++L A+eY+k+Lq C.cajan_40927 49 EHIMAERKRRENITKMFIALSALIPGL-----KKMDKASVLSTAIEYVKHLQ 95 699************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.434 | 45 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.14E-18 | 48 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-18 | 49 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.7E-12 | 49 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.80E-13 | 50 | 99 | No hit | No description |
SMART | SM00353 | 1.6E-14 | 51 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 231 aa Download sequence Send to blast |
MPCNLSFEDS TLVPNVPKKT CQYFHGEHSQ EKPQNIKPKK GRSCSQTHEH IMAERKRREN 60 ITKMFIALSA LIPGLKKMDK ASVLSTAIEY VKHLQQRVKV LEQEKKRKIE TIGCFKTNKT 120 NVADDYVSCT YDVLDDKPIK ICPKVEARVS GKDVLIKVMC EKQKGIVGKL LAKVEAHDLS 180 VVCTNVLPFG NSALIITTIA KVHTIASIHV KKYILKLNKI VSPKQKIILT F |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 53 | 58 | ERKRRE |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | C.cajan_40927 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_029125429.1 | 1e-146 | transcription factor bHLH18 | ||||
TrEMBL | A0A151R4X4 | 1e-167 | A0A151R4X4_CAJCA; Transcription factor bHLH25 | ||||
STRING | GLYMA07G13406.1 | 2e-91 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16348 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37850.1 | 2e-40 | bHLH family protein |