PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_40532
Common NameKK1_042188
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 313aa    MW: 35339 Da    PI: 6.6206
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_40532genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.3e-152269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W+++Ede+l+++    G g+W+ Iar  g+ R++k+c++rw +yl
    C.cajan_40532 22 KGLWSPDEDEKLIRYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYL 69
                     678*******************************************97 PP
2Myb_DNA-binding50.93.6e-1675119147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++++E++l+++++  lG++ W+ Ia++++ gRt++++k++w++ 
    C.cajan_40532  75 RGAFSPQEEDLIIHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNST 119
                      89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.7231769IPR017930Myb domain
SuperFamilySSF466891.64E-2820116IPR009057Homeodomain-like
SMARTSM007175.8E-122171IPR001005SANT/Myb domain
PfamPF002495.5E-142269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-232376IPR009057Homeodomain-like
CDDcd001671.83E-102569No hitNo description
PROSITE profilePS5129425.65570124IPR017930Myb domain
SMARTSM007174.5E-1674122IPR001005SANT/Myb domain
PfamPF002494.8E-1575119IPR001005SANT/Myb domain
CDDcd001671.31E-1177120No hitNo description
Gene3DG3DSA:1.10.10.604.6E-2677125IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MRKPDLMANK DKVNNIKIKL RKGLWSPDED EKLIRYMLTN GQGCWSDIAR NAGLQRCGKS  60
CRLRWINYLR PDLKRGAFSP QEEDLIIHLH SILGNRWSQI AARLPGRTDN EIKNFWNSTL  120
KKRLKTNTCT PSLNNSTDSS ESKDVLSGIM PFNEHDIMTM CMDSSSSISS MQAMALPDQF  180
DPFSMFVNNN QCDMTTNVSP NFPNMPASCM TQIGMVEGHQ GNYGVLEPTK MGLGLPSLES  240
RSIESNSVPI DVKSHNNNHF NYGSFNNTDK IQGSKVEDLI GFGNHGQGEN LKMGEWDLEN  300
LMQDITSFPF LEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27201265110B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119125LKKRLKT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as molecular switch in the NAC012/SND1-mediated transcriptional network regulating secondary wall biosynthesis. Is directly activated by NAC012/SND1 and its close homologs, including NAC043/NST1, NAC066/NST2, NAC101/VND6 and NAC030/VND7. Is required for functional expression of a number of secondary wall-associated transcription factors and secondary wall biosynthetic genes involved in cellulose, xylan and lignin synthesis. Functions redundantly with MYB46 in the transcriptional regulatory cascade leading to secondary wall formation in fibers and vessels (PubMed:19808805). Transcription activator that binds to the DNA consensus sequence 5'-ACC[AT]A[AC][TC]-3', designated as the secondary wall MYB-responsive element (SMRE). Regulates directly numerous transcription factors and a number of genes involved in secondary wall biosynthesis that contain SMRE elements in their promoters (PubMed:22197883). {ECO:0000269|PubMed:19808805, ECO:0000269|PubMed:22197883}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_40532
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-88AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020205368.10.0transcription factor MYB83
SwissprotQ9C6U12e-79MYB83_ARATH; Transcription factor MYB83
TrEMBLA0A151R2650.0A0A151R265_CAJCA; Transcription factor MYB46
STRINGGLYMA12G36630.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77434128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.17e-80myb domain protein 83
Publications ? help Back to Top
  1. Vargas L, et al.
    Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants.
    Biotechnol Biofuels, 2016. 9: p. 139
    [PMID:27390589]
  2. Piya S,Kihm C,Rice JH,Baum TJ,Hewezi T
    Cooperative Regulatory Functions of miR858 and MYB83 during Cyst Nematode Parasitism.
    Plant Physiol., 2017. 174(3): p. 1897-1912
    [PMID:28512179]