PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_40517 | ||||||||
Common Name | KK1_042589 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | Trihelix | ||||||||
Protein Properties | Length: 249aa MW: 29094.6 Da PI: 7.054 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 90.9 | 1.4e-28 | 138 | 222 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++ ev+ Li++r+++e+++r +k+ Wee+s++m+ g++rs+k+Ckekwen+nk+yk++ + kkr +s+tcpyfd+l+ C.cajan_40517 138 RWPDVEVQSLITVRTSLEHKVRLMGSKGSIWEEISEAMHGMGYNRSAKKCKEKWENINKYYKRTVGSGKKR-RLNSKTCPYFDELD 222 8*****************************************************************99998.89999*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-5 | 128 | 194 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.352 | 131 | 195 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 1.1E-21 | 137 | 224 | No hit | No description |
CDD | cd12203 | 1.05E-21 | 137 | 201 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
DEDDDNSSAS SEALGSRKRR RKTERKLEGF VKNLVTKVME KQELMHRQLV EMIENKERER 60 IKREEAWKHE EMERIRKDEE ARAQERSRNL ALISFIQNLL GHEIQIPQPV EEACGKREED 120 EVEVNAQKDL NNDSSNNRWP DVEVQSLITV RTSLEHKVRL MGSKGSIWEE ISEAMHGMGY 180 NRSAKKCKEK WENINKYYKR TVGSGKKRRL NSKTCPYFDE LDTLYRNGPL SIGNASSNTS 240 DVPQIEEKE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 16 | 20 | RKRRR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00552 | DAP | Transfer from AT5G47660 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_40517 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020205701.1 | 0.0 | trihelix transcription factor GTL1 | ||||
TrEMBL | A0A151R129 | 0.0 | A0A151R129_CAJCA; Uncharacterized protein (Fragment) | ||||
STRING | XP_007147613.1 | 1e-144 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11112 | 33 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47660.1 | 1e-47 | Trihelix family protein |