PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_40319
Common NameKK1_039303
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HB-other
Protein Properties Length: 125aa    MW: 13744.8 Da    PI: 10.9875
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_40319genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.25.8e-081374655
                   S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
       Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                   +ft+ +++e+e+  ++  n  p ++  + LA+k            ++ +qV +WFqN+R+  
  C.cajan_40319 13 RFTQPEVTEMEAILQEhnNAMPARDVLTALAEKFsespdrkgkiTVQMKQVWNWFQNKRYAI 74
                   69999*********9666999*********************99999************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.4E-11477IPR009057Homeodomain-like
SMARTSM003890.002781IPR001356Homeobox domain
PROSITE profilePS500719.5231377IPR001356Homeobox domain
PfamPF000462.2E-51374IPR001356Homeobox domain
CDDcd000860.003191375No hitNo description
Gene3DG3DSA:1.10.10.609.1E-91381IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MGRPPSNGGP AFRFTQPEVT EMEAILQEHN NAMPARDVLT ALAEKFSESP DRKGKITVQM  60
KQVWNWFQNK RYAIRAKSSK TPGKLNITPL ARDDSTPVRS MPQQPTAAPI PAASASGRML  120
LLLSA
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_40319
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1343341e-101BT134334.1 Lotus japonicus clone JCVI-FLLj-21B7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020203148.17e-79protein SAWADEE HOMEODOMAIN HOMOLOG 2
SwissprotQ8RWJ74e-46SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A151R9T11e-86A0A151R9T1_CAJCA; Uncharacterized protein
STRINGGLYMA06G35561.12e-69(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2094844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.34e-48sequence-specific DNA binding transcription factors;sequence-specific DNA binding