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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
C.cajan_39849 |
| Common Name | KK1_037444 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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| Family |
BBR-BPC |
| Protein Properties |
Length: 280aa MW: 31183.9 Da PI: 10.3666 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| C.cajan_39849 | genome | IIPG | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 352.1 | 1.2e-107 | 1 | 280 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdaki.rernlalsekkaavaerd.........maflqrdkalaernkalverdnkllall 85
md d+ + rn+gyyepa +k++lglqlmss++e+ r++ + ls++++a+++rd m++ +rd+++++ +++k+++++
C.cajan_39849 1 MDGDNGLNiRNWGYYEPA--IKSHLGLQLMSSMPEKPLIGgRNAAV-LSGTNGAFHHRDigmhqatypMEY-MRDAWISS-------QRDKYMNMI 85
888888888********9..**************988766355555.9***********************.9*****99.......889****** PP
GAGA_bind 86 lvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkke 181
+++++ ++ +++t+s++++q+ ++ + ++ +e++p+eea+ ++k + ++kkrq +k+pk++kakk+k+ ++++k+++ ++
C.cajan_39849 86 PTNHN--------YGGIPETSSAHQIQM-----IQAPEMP------KEEKPVEEAPVVEKPNGTRKKRQGPKVPKSPKAKKPKRGPRTPKDEN-TP 161
*9997........999************.....3322222......345788999999999999999*****************777775555.55 PP
GAGA_bind 182 saderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGy 277
s+ +r++a+kk++++v+ng+++D+s++P+PvCsCtG+++qCY+WG+GGWqSaCCtt +S+yPLP+stkrrgaRiagrKmS gafkk+LekLaaeGy
C.cajan_39849 162 SV-QRARAPKKTTEIVINGIDMDISSIPIPVCSCTGTPQQCYRWGSGGWQSACCTTGMSIYPLPMSTKRRGARIAGRKMSIGAFKKVLEKLAAEGY 256
54.79******************************************************************************************* PP
GAGA_bind 278 dlsnpvDLkdhWAkHGtnkfvtir 301
++snp+DL+++WAkHGtnkfvtir
C.cajan_39849 257 NFSNPIDLRTYWAKHGTNKFVTIR 280
***********************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 280 aa
Download sequence Send
to blast |
MDGDNGLNIR NWGYYEPAIK SHLGLQLMSS MPEKPLIGGR NAAVLSGTNG AFHHRDIGMH 60
QATYPMEYMR DAWISSQRDK YMNMIPTNHN YGGIPETSSA HQIQMIQAPE MPKEEKPVEE 120
APVVEKPNGT RKKRQGPKVP KSPKAKKPKR GPRTPKDENT PSVQRARAPK KTTEIVINGI 180
DMDISSIPIP VCSCTGTPQQ CYRWGSGGWQ SACCTTGMSI YPLPMSTKRR GARIAGRKMS 240
IGAFKKVLEK LAAEGYNFSN PIDLRTYWAK HGTNKFVTIR
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF502431 | 0.0 | AF502431.1 Glycine max GAGA-binding protein (gbp) mRNA, complete cds. |
| GenBank | BT093384 | 0.0 | BT093384.1 Soybean clone JCVI-FLGm-17A2 unknown mRNA. |
