PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_39766

Common Name

KK1_040936

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

GRAS

Protein Properties

Length: 517aa MW: 57858.7 Da PI: 6.411

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_39766	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	278.8	1.7e-85	158	516	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 +e L+++A+++++++++ aqa+L+rl+++ +sp ++p++R+a++f+ AL++ l++ + +++ +s + +++++ +k+fs +sPi+ fs C.cajan_39766 158 IEELIRAADCFDTSHFQVAQAILERLNQRltRSPMAKPLHRAAFHFKDALHSILSG-------SNRTRLSSMLEIVQTIKTYKAFSGISPIPMFSI 246 679***********************9999*******************9.......455566665669999************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 +t+Nqa+le ++g++ vH+iDf+i+ G+Q+++L++++a+++ + + l iT+v+++e s+ e + ++e+L++fA+ lg++++ +++ +++e+++ C.cajan_39766 247 FTTNQALLETLNGSSFVHVIDFEIGLGIQYASLMKEIAEKAtGASTLLHITAVVPEE--SAVENRLVRENLNQFAHDLGIRVQVDFVPLRTFETVS 340 ************************************94555699***66..999999*****************9999** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh...nsesFlerflealeyysalfdsleaklpres..ee 281 +++ r+ gE++aV l ++++ l ++ ++L v+++ P vvv+v+ e + ++sF ++++++le+ys++++sl+a +++ e+ C.cajan_39766 341 FKAVRFLDGEKIAVLLTPAIFSRL---GAGG---AAFLAEVRRTAPGVVVFVDGEGWTessAAASFRRGVVNSLEFYSMMLESLDAAVAAGGggEW 430 *****************999...3333...58***************655213556****************999988877899 PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + +E ll+++i +v ga+ ++ Wre++ aG++pv+ls++a qa++ll+kv+ +g++v++++++lvl+W++rp+v++SaWr C.cajan_39766 431 VRRIEMLLLRPKIFAAVE--GAR-----RRTPPWREAFYGAGMRPVQLSQFADYQAECLLAKVQIRGFHVDKRHAELVLCWHERPMVATSAWR 516 9********99885..555.....3479**********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	35.438	131	496	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.8E-83	158	516	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence Send to blast
MRVPSSPQLT QNLLLHSSPN TSTTTNPTTF TYEPTSVLDL GRSPSPEKKP SAPRPDPQHN 60 NNNNNNTNNL DLDEHVLPNL DWWDSIMKDL SLPEESPTPL LKNNNINACI PDFPPFDHPP 120 DFTTSLSEIY TNQNLPYTYT LEQSFHDLNQ HNNNWDFIEE LIRAADCFDT SHFQVAQAIL 180 ERLNQRLTRS PMAKPLHRAA FHFKDALHSI LSGSNRTRLS SMLEIVQTIK TYKAFSGISP 240 IPMFSIFTTN QALLETLNGS SFVHVIDFEI GLGIQYASLM KEIAEKATGA STLLHITAVV 300 PEESAVENRL VRENLNQFAH DLGIRVQVDF VPLRTFETVS FKAVRFLDGE KIAVLLTPAI 360 FSRLGAGGAA FLAEVRRTAP GVVVFVDGEG WTESSAAASF RRGVVNSLEF YSMMLESLDA 420 AVAAGGGGEW VRRIEMLLLR PKIFAAVEGA RRRTPPWREA FYGAGMRPVQ LSQFADYQAE 480 CLLAKVQIRG FHVDKRHAEL VLCWHERPMV ATSAWRC

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence Send to blast

MRVPSSPQLT QNLLLHSSPN TSTTTNPTTF TYEPTSVLDL GRSPSPEKKP SAPRPDPQHN  60
NNNNNNTNNL DLDEHVLPNL DWWDSIMKDL SLPEESPTPL LKNNNINACI PDFPPFDHPP  120
DFTTSLSEIY TNQNLPYTYT LEQSFHDLNQ HNNNWDFIEE LIRAADCFDT SHFQVAQAIL  180
ERLNQRLTRS PMAKPLHRAA FHFKDALHSI LSGSNRTRLS SMLEIVQTIK TYKAFSGISP  240
IPMFSIFTTN QALLETLNGS SFVHVIDFEI GLGIQYASLM KEIAEKATGA STLLHITAVV  300
PEESAVENRL VRENLNQFAH DLGIRVQVDF VPLRTFETVS FKAVRFLDGE KIAVLLTPAI  360
FSRLGAGGAA FLAEVRRTAP GVVVFVDGEG WTESSAAASF RRGVVNSLEF YSMMLESLDA  420
AVAAGGGGEW VRRIEMLLLR PKIFAAVEGA RRRTPPWREA FYGAGMRPVQ LSQFADYQAE  480
CLLAKVQIRG FHVDKRHAEL VLCWHERPMV ATSAWRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-20	178	516	22	375	GRAS family transcription factor containing protein, expressed
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_39766

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020204446.1	0.0	scarecrow-like protein 15
Swissprot	O23210	1e-159	SCL15_ARATH; Scarecrow-like protein 15
TrEMBL	A0A151R5G1	0.0	A0A151R5G1_CAJCA; Scarecrow-like protein 15
STRING	XP_007156025.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5959	32	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36710.1	1e-148	GRAS family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]