PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_39555
Common NameKK1_043890
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GRAS
Protein Properties Length: 544aa    MW: 61507 Da    PI: 5.4784
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_39555genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS426.81.7e-1301765442374
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                    +e L +cA+av+ +d+e +++l+++l++++s +g+p+qRl ay++eAL +rla+s+s++ykal+++e +    se l+ ++l++e++P+lkf+++ 
  C.cajan_39555 176 KEMLCTCAKAVAGNDMETTEWLMSELRKMVSVSGNPIQRLGAYMLEALVSRLASSGSTIYKALKCKEPT---GSELLSHMHLLYEICPYLKFGYMS 268
                    789*****************************************************************9...9*********************** PP

           GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                    aN aI ea+++e++vHiiDf+i+qG+QW++L+qaLa Rp+gpp++RiT +++++s   +   le +gerL+k+A++ ++pfef++ +  + +++el
  C.cajan_39555 269 ANGAIAEAMKEESEVHIIDFQINQGIQWVSLIQALAGRPGGPPKIRITSFDDSTSAyaRGGGLEIVGERLSKLAQAYNIPFEFHA-IGASPTEVEL 363
                    ****************************************************998899999************************.6888999*** PP

           GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                    ++L+++pgEa+aVn++++lh+++desv+++++rd++++l k l Pk+v++veqe+++   +Fl rf+e+++yy a+f+s+++ lpre++eri+vE+
  C.cajan_39555 364 KDLELQPGEAIAVNFAMMLHHVPDESVDIQNHRDRLVRLAKFLCPKIVTLVEQESNT-CVPFLPRFMETMNYYLAVFESIDVALPREHKERINVEQ 458
                    ********************************************************9.89************************************ PP

           GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    ++l+re+vn++acegaer+erhe l+kWr+r+ +aGF+p+pl++++++++k l + + ++ y++ee++++++lgW+++ L++ +aWr
  C.cajan_39555 459 HCLAREVVNLIACEGAERVERHELLRKWRSRFAMAGFTPYPLNSFINSSIKNLQQSYRGH-YTLEERDDAICLGWMNQVLITSCAWR 544
                    *********************************************************976.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.391149525IPR005202Transcription factor GRAS
PfamPF035146.0E-128176544IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MQMSQKHKVS YGSNRFNIEH VQNLASCCIL KSENLDYYSS SDNSSHATYP SVRTLEQYCT  60
LESSTNNSFP SLNSPSTISF SPNNSPLSNL QSKSYVLSSQ NSLEIMNDSL KNESCLTHND  120
DDLRHKIREL ESAMLGHDAD MLDIYDTVIP EESDSFLLEA ERWKRMMEMI SRGDLKEMLC  180
TCAKAVAGND METTEWLMSE LRKMVSVSGN PIQRLGAYML EALVSRLASS GSTIYKALKC  240
KEPTGSELLS HMHLLYEICP YLKFGYMSAN GAIAEAMKEE SEVHIIDFQI NQGIQWVSLI  300
QALAGRPGGP PKIRITSFDD STSAYARGGG LEIVGERLSK LAQAYNIPFE FHAIGASPTE  360
VELKDLELQP GEAIAVNFAM MLHHVPDESV DIQNHRDRLV RLAKFLCPKI VTLVEQESNT  420
CVPFLPRFME TMNYYLAVFE SIDVALPREH KERINVEQHC LAREVVNLIA CEGAERVERH  480
ELLRKWRSRF AMAGFTPYPL NSFINSSIKN LQQSYRGHYT LEERDDAICL GWMNQVLITS  540
CAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-571795448375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_39555
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020206541.10.0scarecrow-like protein 21
RefseqXP_029125764.10.0scarecrow-like protein 21
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A151QXN40.0A0A151QXN4_CAJCA; Scarecrow-like protein 5
STRINGGLYMA14G01960.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]