PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | C.cajan_38992 | ||||||||
Common Name | KK1_035470 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 155aa MW: 17867.1 Da PI: 5.6828 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 139.1 | 1.2e-43 | 57 | 155 | 1 | 96 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 ql + w+kq ie++t+f+ h+lPla+ikki+k+dedv+misaeaP++++kace+fi +lt r+w +a++n+rrtlkk di++a+++td+fdfl+ C.cajan_38992 57 QLDNVWAKQykeIEETTNFNTHSLPLAKIKKIMKFDEDVRMISAEAPIVFAKACEMFIQDLTTRAWANADNNNRRTLKKMDITSAISKTDVFDFLL 152 68899*9999899*********************************************************************************** PP NF-YC 94 div 96 div C.cajan_38992 153 DIV 155 *97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.36E-31 | 5 | 151 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.5E-20 | 79 | 142 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 3.3E-33 | 80 | 155 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 155 aa Download sequence Send to blast |
MDQNQHGEAT REVGPPAHTN PPTQTAGPSN PSFYSREQQY VPPQYMYQLQ QNQLQQQLDN 60 VWAKQYKEIE ETTNFNTHSL PLAKIKKIMK FDEDVRMISA EAPIVFAKAC EMFIQDLTTR 120 AWANADNNNR RTLKKMDITS AISKTDVFDF LLDIV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 5e-43 | 65 | 155 | 3 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | C.cajan_38992 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_029124570.1 | 1e-114 | nuclear transcription factor Y subunit C-2 | ||||
Swissprot | Q9XE33 | 1e-45 | NFYC6_ORYSJ; Nuclear transcription factor Y subunit C-6 | ||||
TrEMBL | A0A151RKW1 | 1e-113 | A0A151RKW1_CAJCA; Nuclear transcription factor Y subunit C-2 | ||||
STRING | GLYMA08G15700.1 | 7e-58 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1257 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G54830.3 | 3e-37 | nuclear factor Y, subunit C3 |
Publications ? help Back to Top | |||
---|---|---|---|
|