PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_37803
Common NameKK1_035558
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family bHLH
Protein Properties Length: 500aa    MW: 55359.4 Da    PI: 7.8596
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_37803genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH551.4e-17267313455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn  ErrRRdriN+++  L++l+P++      K +Ka++Le+A+eY+ksLq
  C.cajan_37803 267 VHNLSERRRRDRINEKMKALQQLIPHS-----SKTDKASMLEEAIEYLKSLQ 313
                    6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.9E-19260320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.47263312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.04E-15266311No hitNo description
SuperFamilySSF474594.71E-20266341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-15267313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-18269318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MNNSVPDWNF GSDSCVTTTN QKKAMGVDQE LVELLWQNGQ VVLHSQTHRK PVVNSFAPRP  60
VLKNFQSRTS EPFGNSSNLI QDDETVSWIQ YPLEDTLEQE FCSNLLSELP HCEVESYKQI  120
KPFEEGKFTK LDASTPLNVS SASPNAHFRD KITGSMSKNE IREGSLMTIG SSYCGSNHIP  180
QDPDASRASS NGKSEMLEPT TTSSSGGSGS SLGKTCSLST RNQGQKRKGV DVEESEDQSE  240
ETELKSATGN KASQRAGSAR RNRAAEVHNL SERRRRDRIN EKMKALQQLI PHSSKTDKAS  300
MLEEAIEYLK SLQLQLQLMW MGSGMAPMMF PGIQHYMSQM GMGMATPPFP PAIHNSMQLP  360
RVPLDQSVSA SQTPNQTLMC QNPILGAFNY QNQMQNPALS EQYARFMSYH LMQNASQPMN  420
VFRYGPQAVQ HSQTMITPGN SSGNMSGAAN IDEAVSGKMG KPLTFFSLLW LTTKSGYHIS  480
YMKLHLLPVP VGKQVVTNRC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1271276ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_37803
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352431e-116AC235243.1 Glycine max strain Williams 82 clone GM_WBb0032L23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020238951.10.0transcription factor PIF4
TrEMBLA0A151RKK00.0A0A151RKK0_CAJCA; Transcription factor PIF4
STRINGGLYMA18G14530.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81462944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.28e-63phytochrome interacting factor 4