PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_37657

Common Name

KK1_042049

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

C2H2

Protein Properties

Length: 488aa MW: 53914.3 Da PI: 9.3807

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_37657	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.4e-05	70	92	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H C.cajan_37657 70 FICEVCNKGFQREQNLQLHRRGH 92 89*******************88 PP
2	zf-C2H2	12.2	0.00057	146	168	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ C.cajan_37657 146 WKCDKCSKKYAVQSDWKAHSKTC 168 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	5.3E-6	69	92	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.18E-7	69	92	No hit	No description
Pfam	PF12171	2.3E-5	70	92	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.99	70	92	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0052	70	92	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	72	92	IPR007087	Zinc finger, C2H2
SMART	SM00355	130	111	141	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	5.3E-5	134	167	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.18E-7	141	166	No hit	No description
SMART	SM00355	150	146	166	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MAAPFSAASL FGIREEDQNQ TKQQHSSTPS SSTTPAAPPQ KKRRNQPGTP NPDAEVIALS 60 PKTLMATNRF ICEVCNKGFQ REQNLQLHRR GHNLPWKLKQ KSTKEPKRKV YLCPEPTCVH 120 HDPSRALGDL TGIKKHYSRK HGEKKWKCDK CSKKYAVQSD WKAHSKTCGT REYRCDCGTL 180 FSRRDSFITH RAFCDALAQE SAREPPNLSS AISNQLYGNS NNMSLGLSQN MSLQDQNTQS 240 KSNQNQSQNY HDHQQGLISN KPFQGLIQLS DLNNNINTPS GSNLFNLPFL SNRANNNNNS 300 NFSDQEQHFN TTEGSNFFSE STIIGTDDHQ TSSTTAPSLF STSLQNTTNF SHMSATALLQ 360 KAAQMGAASS SNNNTNTNTN TTNTSASSLL RSLASKSDHR PLSPANYATI FNNSVQEMMN 420 IPGFEAYDHG MNKEPKLSVG ASDRLTRDFL GVTQQQQQQR GFNMSSLEAE TNNAAPSGQS 480 FGGGGNFQ

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MAAPFSAASL FGIREEDQNQ TKQQHSSTPS SSTTPAAPPQ KKRRNQPGTP NPDAEVIALS  60
PKTLMATNRF ICEVCNKGFQ REQNLQLHRR GHNLPWKLKQ KSTKEPKRKV YLCPEPTCVH  120
HDPSRALGDL TGIKKHYSRK HGEKKWKCDK CSKKYAVQSD WKAHSKTCGT REYRCDCGTL  180
FSRRDSFITH RAFCDALAQE SAREPPNLSS AISNQLYGNS NNMSLGLSQN MSLQDQNTQS  240
KSNQNQSQNY HDHQQGLISN KPFQGLIQLS DLNNNINTPS GSNLFNLPFL SNRANNNNNS  300
NFSDQEQHFN TTEGSNFFSE STIIGTDDHQ TSSTTAPSLF STSLQNTTNF SHMSATALLQ  360
KAAQMGAASS SNNNTNTNTN TTNTSASSLL RSLASKSDHR PLSPANYATI FNNSVQEMMN  420
IPGFEAYDHG MNKEPKLSVG ASDRLTRDFL GVTQQQQQQR GFNMSSLEAE TNNAAPSGQS  480
FGGGGNFQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	7e-36	142	203	3	64	Zinc finger protein JACKDAW
5b3h_F	7e-36	142	203	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:24821766, ECO:0000305\|PubMed:19726569}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_37657

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by gibberellin. {ECO:0000305\|PubMed:17933900}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC160454	1e-160	AC160454.31 Glycine max cultivar Williams 82 clone gmw1-15k6, complete sequence.
GenBank	AP015043	1e-160	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020205311.1	0.0	protein indeterminate-domain 5, chloroplastic
Swissprot	Q8GYC1	1e-125	IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBL	A0A151R2I9	0.0	A0A151R2I9_CAJCA; Zinc finger protein JACKDAW
STRING	XP_007153119.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1536	33	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	1e-105	indeterminate(ID)-domain 4

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]