PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_37173
Common NameKK1_034657
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HSF
Protein Properties Length: 297aa    MW: 32824.8 Da    PI: 7.4228
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_37173genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.21.1e-32101242102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT............X..TTSEEEEE CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks............k..ekiweFkh 83 
                    Fl+k+y++++d+++++++sws++gn+fvv+++ +fak++LpkyFkh+nf+SFvRQLn+Y F        +  s            k  ++ weF++
  C.cajan_37173  10 FLTKTYQLVDDSATDDVVSWSQTGNTFVVWKHADFAKDLLPKYFKHNNFSSFVRQLNTYYFPLRIFCFVEVYStphevhgkmgfrKivPDKWEFAN 105
                    9**********************************************************996543333332233444556666651669******* PP

                    SXXXXXXXXXXXXXXXXXX CS
   HSF_DNA-bind  84 ksFkkgkkellekikrkks 102
                    ++Fk+g+kell +ikr+k+
  C.cajan_37173 106 EYFKRGQKELLVEIKRRKT 124
                    *****************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.04E-306122IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.1E-366122IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-506122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-171033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.3E-2910122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-174860IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-176173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.3706.0E-5167199IPR014751DNA repair protein XRCC4, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006302Biological Processdouble-strand break repair
GO:0006310Biological ProcessDNA recombination
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MSQRSTPAPF LTKTYQLVDD SATDDVVSWS QTGNTFVVWK HADFAKDLLP KYFKHNNFSS  60
FVRQLNTYYF PLRIFCFVEV YSTPHEVHGK MGFRKIVPDK WEFANEYFKR GQKELLVEIK  120
RRKTVVQAPA AGKSVGGGGN ISASHSGGGD DMGSTSTGSV EATPQGADLS GENEKLKKDN  180
EKLSSELARA KKQCEELVSF LRESLKVCPD VINRIIRQGT CGSGDDAVRF DANDDDENAV  240
GECEEPSGGE SLKLFGVWLK GQDGKDNENL KIASGNCRKR GPQDPIARTA KELKTLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-23512425131Heat shock factor protein 1
5d5v_B6e-23512425131Heat shock factor protein 1
5d5v_D6e-23512425131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_37173
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020238183.10.0heat shock factor protein HSF24
SwissprotP223352e-90HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A151RMT00.0A0A151RMT0_CAJCA; Heat shock factor protein HSF24
STRINGXP_007155926.11e-151(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71143247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.14e-62heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]