PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_36946
Common NameKK1_032437
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C2H2
Protein Properties Length: 264aa    MW: 30734.2 Da    PI: 9.7761
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_36946genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.13.5e-06529123
                   EEET..TTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                   y+C   dC  s++rk++L+rH+ ++
  C.cajan_36946  5 YVCAveDCQSSYRRKDHLTRHLLLC 29
                   99*******************9876 PP
2zf-C2H211.90.000672952323
                   ET..TTTEEESSHHHHHHHHHH.T CS
        zf-C2H2  3 Cp..dCgksFsrksnLkrHirt.H 23
                   Cp  +C++ Fs +sn krH    H
  C.cajan_36946 29 CPfeNCSMEFSLQSNVKRHVEHvH 52
                   88889**************87666 PP
3zf-C2H218.55.3e-06157182123
                    EEET..TTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                    ++C+   C+ +FsrksnL +H++  H
  C.cajan_36946 157 FRCEfkSCSCTFSRKSNLDKHMKAvH 182
                    89********************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.4E-8226IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.54E-5327No hitNo description
SMARTSM00355180525IPR015880Zinc finger, C2H2-like
SMARTSM0035512752IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.6212757IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-42952IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002802952IPR007087Zinc finger, C2H2
SMARTSM00355256791IPR015880Zinc finger, C2H2-like
SMARTSM003550.399124IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280101124IPR007087Zinc finger, C2H2
SMARTSM0035552127148IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.52E-8139193No hitNo description
SMARTSM003550.0066157182IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.9E-6157185IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015714.046157187IPR007087Zinc finger, C2H2
PROSITE patternPS000280159182IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.3E-6186211IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003559188214IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280190214IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
FQRPYVCAVE DCQSSYRRKD HLTRHLLLCP FENCSMEFSL QSNVKRHVEH VHGDSSTSTN  60
NKSHKQHRCP ETGRGKVFRF ASRLQKHEDS HVKLESVDVV CLEPGCMKHF TNVQCLQAHV  120
KSSHQYMTCD ICGTKQLKKN IKHHLRSHEP SSSSETFRCE FKSCSCTFSR KSNLDKHMKA  180
VHFKEKPFVC GFPDCGVRFA YKHVRDNHEK TAKHAFTLGD FEKVNEEFKS RLMGGKKRKF  240
PTVEMLVKKR VASPSQLQNW LFMQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230238RLMGGKKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_36946
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027913974.11e-152transcription factor IIIA-like isoform X1
SwissprotQ84MZ45e-93TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A151RTY70.0A0A151RTY7_CAJCA; Transcription factor IIIA (Fragment)
STRINGXP_007142319.11e-150(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.15e-97transcription factor IIIA