PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_36292
Common NameKK1_039599
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 329aa    MW: 37436.8 Da    PI: 5.1735
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_36292genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.4e-161663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++ Ed++l+  ++++G ++W++ ++  g+ R++k+c++rw +yl
    C.cajan_36292 16 RGPWSPSEDLKLIAFIQKYGHENWRALPKQAGLLRCGKSCRLRWINYL 63
                     89******************************99************97 PP
2Myb_DNA-binding52.31.3e-1669114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T eE+e +++++k lG++ W++Ia++++ gRt++++k+ w+++l
    C.cajan_36292  69 RGSFTLEEEETIIRLHKALGNK-WSKIASRLP-GRTDNEIKNVWNTHL 114
                      899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.8E-24766IPR009057Homeodomain-like
PROSITE profilePS5129414.4241163IPR017930Myb domain
SuperFamilySSF466891.8E-2914110IPR009057Homeodomain-like
SMARTSM007172.2E-131565IPR001005SANT/Myb domain
PfamPF002491.0E-141663IPR001005SANT/Myb domain
CDDcd001676.79E-101863No hitNo description
PROSITE profilePS5129424.96264118IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-2667117IPR009057Homeodomain-like
SMARTSM007176.1E-1568116IPR001005SANT/Myb domain
PfamPF002493.1E-1569114IPR001005SANT/Myb domain
CDDcd001672.76E-1071114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009809Biological Processlignin biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGRGRAPCCD KSQVKRGPWS PSEDLKLIAF IQKYGHENWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDVKRG SFTLEEEETI IRLHKALGNK WSKIASRLPG RTDNEIKNVW NTHLKKRSVA  120
KKSLNSSADE SKPDSSITSS FSSSSESFFS NERPNSPKTT TLVSLSSIES NIATSSQDVA  180
CKAEQLLASP LSYLGSYDFG SILEEVDKPN HLFEIPWESD YDFCKLLDDD NFGSFQSNEV  240
QLSEFPASQN VILEEEIVQD VKVTQWPHDF ENKFGVVGEI KESNKDHFLP KNYEVGPEID  300
HTQTFDLDDM RTPEAELDFG YIQLWPSWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27161177107B-MYB
1mse_C1e-27161174104C-Myb DNA-Binding Domain
1msf_C1e-27161174104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00144DAPTransfer from AT1G16490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_36292
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020203380.10.0transcription factor MYB58
TrEMBLA0A151R9060.0A0A151R906_CAJCA; Myb-related protein Zm1
STRINGGLYMA08G17861.11e-167(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100293042
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.14e-85myb domain protein 58