PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_36197 | ||||||||
Common Name | KK1_039149 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | SBP | ||||||||
Protein Properties | Length: 142aa MW: 16620.2 Da PI: 6.3959 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 135.1 | 2.2e-42 | 61 | 137 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqv++C+adlseak+yhrrhkvCe h+ka +v ++gl+qrfCqqCsrfhelsefD++krsCr+rLa+hnerrrk++a C.cajan_36197 61 CQVDNCDADLSEAKQYHRRHKVCEYHAKAHSVHMAGLQQRFCQQCSRFHELSEFDDTKRSCRTRLAGHNERRRKNAA 137 **************************************************************************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF037575 | 4.4E-57 | 1 | 142 | IPR017238 | Squamosa promoter-binding protein |
Gene3D | G3DSA:4.10.1100.10 | 7.8E-36 | 53 | 122 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.889 | 58 | 135 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 9.42E-39 | 59 | 139 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.4E-33 | 61 | 134 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MDRSEGKRVL RYKEEEEDED EEEEEEIEMG FGEDGRRNKR AMTDLYGKRG SKGGSSMPPS 60 CQVDNCDADL SEAKQYHRRH KVCEYHAKAH SVHMAGLQQR FCQQCSRFHE LSEFDDTKRS 120 CRTRLAGHNE RRRKNAADYQ GE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 7e-38 | 50 | 134 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_36197 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT092024 | 1e-144 | BT092024.1 Soybean clone JCVI-FLGm-9K12 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020203007.1 | 1e-101 | squamosa promoter-binding-like protein 3 isoform X1 | ||||
Swissprot | Q38741 | 4e-44 | SBP1_ANTMA; Squamosa promoter-binding protein 1 | ||||
TrEMBL | A0A151RAJ5 | 1e-99 | A0A151RAJ5_CAJCA; Squamosa promoter-binding-like protein | ||||
STRING | GLYMA07G31880.1 | 6e-67 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF535 | 34 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53160.2 | 4e-40 | squamosa promoter binding protein-like 4 |
Publications ? help Back to Top | |||
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