PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_36156
Common NameKK1_034123
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GRAS
Protein Properties Length: 451aa    MW: 50636.5 Da    PI: 6.7424
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_36156genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS323.93.3e-99954502374
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                    +e+L+++Ae +++g+lela+ +Larl+++ sp g+p+qR+a+yf+eAL+  l++  +   ++l+ s+t       ++ a+k fsevsP+l+f+++t
  C.cajan_36156  95 IEQLFKAAELIDAGNLELAHGILARLNHQLSPIGKPFQRAAFYFKEALQLLLHS--NANNSSLTFSPT---GLLLKIGAYKSFSEVSPVLQFANFT 185
                    789**************************************************9..333344444444...499********************** PP

           GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                    +Nqa+leaveg +r+HiiDfdi+ G+QW +++q+La R++g+p+l+iT+++sp+++++ el+ t+e+L+++A e++++fe ++l  ++l++   + 
  C.cajan_36156 186 CNQALLEAVEGFDRIHIIDFDIGFGGQWSSFMQELALRNGGAPKLKITAFVSPSHHDEIELSFTQENLKQYAGEIDMSFELEILSLESLNSA-SWP 280
                    ***********************************************************************************966666665.444 PP

           GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvEre 288
                      ++  Ea++Vn+ +  ++ +      +s+++ vL++vk+l Pk+vv  ++ +d+++++F ++++ al+ ys l++sl ++++  + +  +++E+ 
  C.cajan_36156 281 QPLRDCEAVVVNMPIGSFSNY------PSYIPLVLRFVKQLMPKIVVTLDRSCDRTDAPFPQHLIFALQSYSGLLESLdAVNV--HPDVLQMIEKY 368
                    56799**********888877......777789*********************************************55554..5578899**** PP

           GRAS 289 llgreivnvva.cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    +l+++ +++v  c g++     e+   W++ l ++GF+p+++s+++++qa++l+++++++g+++e+++ slvl+W+++ LvsvS Wr
  C.cajan_36156 369 YLQPAMEKLVLgCHGSQ-----ERTLPWKNLLLSSGFSPLTFSNFTESQAECLVQRTPGKGFHIEKRQSSLVLCWQRKDLVSVSTWR 450
                    ********986267776.....7788************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.24768430IPR005202Transcription factor GRAS
PfamPF035141.1E-9695450IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
KTVAMWALSP LLVWTPKGKQ ALPHPPLHCL PMEPMDEKLQ VLSSQFILNQ NPSQFMPNPG  60
LVLPLTYSQL QEHHQLLPQP PAKRLNCGPN YQAIIEQLFK AAELIDAGNL ELAHGILARL  120
NHQLSPIGKP FQRAAFYFKE ALQLLLHSNA NNSSLTFSPT GLLLKIGAYK SFSEVSPVLQ  180
FANFTCNQAL LEAVEGFDRI HIIDFDIGFG GQWSSFMQEL ALRNGGAPKL KITAFVSPSH  240
HDEIELSFTQ ENLKQYAGEI DMSFELEILS LESLNSASWP QPLRDCEAVV VNMPIGSFSN  300
YPSYIPLVLR FVKQLMPKIV VTLDRSCDRT DAPFPQHLIF ALQSYSGLLE SLDAVNVHPD  360
VLQMIEKYYL QPAMEKLVLG CHGSQERTLP WKNLLLSSGF SPLTFSNFTE SQAECLVQRT  420
PGKGFHIEKR QSSLVLCWQR KDLVSVSTWR C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-3011245021375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_36156
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006573232.10.0scarecrow-like protein 27
RefseqXP_028223290.10.0scarecrow-like protein 27
SwissprotO813161e-150SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A151RP960.0A0A151RP96_CAJCA; Scarecrow-like protein 6 (Fragment)
STRINGGLYMA01G18040.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-121GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]