PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_35697

Common Name

KK1_034612

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

NF-YB

Protein Properties

Length: 132aa MW: 14545.3 Da PI: 7.5048

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_35697	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	138.3	2e-43	1	78	17	94
NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 mkk+lP n+ki+kdaketvqe vsefisf+tseasdkcqrekrktingddllwa+atlGfedy++plk+ylk yr+ + C.cajan_35697 1 MKKALPPNGKIAKDAKETVQEGVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLKTYRDGD 78 9**************************************************************************865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	7.5E-20	1	55	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	9.72E-30	1	90	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	9.2E-40	1	89	IPR009072	Histone-fold
PRINTS	PR00615	5.5E-19	19	37	No hit	No description
PRINTS	PR00615	5.5E-19	38	56	No hit	No description
PRINTS	PR00615	5.5E-19	57	75	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 132 aa Download sequence Send to blast
MKKALPPNGK IAKDAKETVQ EGVSEFISFI TSEASDKCQR EKRKTINGDD LLWAMATLGF 60 EDYIDPLKIY LKTYRDGDSK GSAKGGDVSG RKEVYPSTNA QLAHQGSFSQ GVNYTNSQPQ 120 AQHMIVPMQG QE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	4e-36	1	76	18	93	NF-YB
4awl_B	4e-36	1	76	19	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	4e-36	1	76	19	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_35697

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	7e-42	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027364964.1	4e-82	nuclear transcription factor Y subunit B-1-like isoform X1
Swissprot	Q8VYK4	2e-58	NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A151RMZ9	2e-94	A0A151RMZ9_CAJCA; Nuclear transcription factor Y subunit B-8
STRING	XP_007144526.1	8e-80	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2545	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37060.3	4e-51	nuclear factor Y, subunit B8

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]