PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | C.cajan_35299 | ||||||||
Common Name | KK1_034718 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 599aa MW: 64850.1 Da PI: 6.4526 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.7 | 1.6e-30 | 340 | 398 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed ++++tYeg+Hnh+ C.cajan_35299 340 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRAILITTYEGNHNHP 398 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.9E-33 | 324 | 400 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-27 | 332 | 400 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.757 | 334 | 400 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.2E-37 | 339 | 399 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.9E-27 | 341 | 398 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 599 aa Download sequence Send to blast |
MARGGGLSID SDPIGSFFPH KPVVLNSFPA DKIINNIITP QPKWKLGPNM DDTVTTNKSP 60 SSPPNTTTTT TTTIPFQVNL ASDQKRPHIG EMDFFPNKTN NENNNNNNNN NFASASTSAP 120 PSLDHLHHTH DHSSTSSILE LKVNTGLNLL TTNTSSDQSM VEDEISPNSE DRRAKSEMVL 180 LQAELERMKV ENHRLRNMLD QVNNNYNALQ MHVVSLMQEQ KGEEEDEEHQ QKQVFDGKLE 240 EEKQIGNGGA LVPRQFMDLG LATNADTAKN GSASDEGPVF EDKKELSRGI EREDSPSDQG 300 VPANNNVPKF SPPRNADQAE ATMRKARVSV RARSEAPMIT DGCQWRKYGQ KMAKGNPCPR 360 AYYRCTMAAG CPVRKQVQRC AEDRAILITT YEGNHNHPLP PAAMAMAQTT SSAARMLLSG 420 SMSSADGLMN ANFLTRTLLP CSSSMATISA SAPFPTVTLD LTQSPNPLQF PKPPSQFQIP 480 FPGVPQNFAN SPASLLPQIF GQALYNQSKF SGLQMSQDIA DTSQLSNQSQ RPPPHLADTV 540 SAATAAIAAD PNFTAALAAA ITSIIGGAQP NNNTSTNNNN NGSTSTNNSN GNIKPSNNK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-22 | 326 | 402 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | C.cajan_35299 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU019575 | 0.0 | EU019575.1 Glycine max WRKY36 (WRKY36) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020238224.1 | 0.0 | probable WRKY transcription factor 31 isoform X1 | ||||
Refseq | XP_020238225.1 | 0.0 | probable WRKY transcription factor 31 isoform X2 | ||||
Swissprot | Q9C519 | 1e-135 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A151RMJ1 | 0.0 | A0A151RMJ1_CAJCA; WRKY transcription factor 6 | ||||
STRING | XP_007149982.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF866 | 34 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-114 | WRKY family protein |