PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_34422 | ||||||||
Common Name | KK1_035843 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | G2-like | ||||||||
Protein Properties | Length: 401aa MW: 44421.3 Da PI: 4.7836 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 109.3 | 2e-34 | 206 | 260 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fveav+qLGGsekAtPk +l+lmkv+gLt++hvkSHLQkYR+ C.cajan_34422 206 KPRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVEGLTIYHVKSHLQKYRT 260 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.479 | 203 | 263 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-32 | 204 | 262 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.91E-18 | 204 | 260 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.0E-25 | 206 | 260 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.3E-10 | 208 | 259 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 5.7E-21 | 293 | 337 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MSSSSRVLST PLENKYMKPP DSFQLSPVKD LTANSSSSNS NRTAGKMLSS PSECPNDNPF 60 SSVSQHERQY QDPPFVSQTM TDNVSSEIHP TTFISHPQES EDISWGPDPF QDILGFPENV 120 SVQHDQVEDS AGYLNDDNVK KTDFGEWVDQ LMSIDDSLHP NWSQLLCDDN VAEPKPKASQ 180 VPQQQHIPSV EVLCNAAAAA TASQTKPRMR WTPELHEAFV EAVNQLGGSE KATPKGVLNL 240 MKVEGLTIYH VKSHLQKYRT ARYKPESSEG TSEKKATPIE EMKSLDLKTS KGITEALRLQ 300 MELQKRLHEQ LEIQRKLQIQ IEDQGKRLQM MFEKQREMGD GNGKGSSSSP LDEPSGAVPD 360 TVIPVETSNE EGDKFGSIPK EGDARADEDE AAPPTKRAKS S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-31 | 206 | 264 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-31 | 206 | 264 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-31 | 206 | 264 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-31 | 206 | 264 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-31 | 206 | 264 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-31 | 206 | 264 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-31 | 206 | 264 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-31 | 206 | 264 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00532 | DAP | Transfer from AT5G29000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_34422 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN201527 | 0.0 | JN201527.1 Glycine max PHR2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020239223.1 | 0.0 | protein PHR1-LIKE 1 isoform X2 | ||||
Swissprot | Q8GUN5 | 2e-95 | PHL1_ARATH; Protein PHR1-LIKE 1 | ||||
TrEMBL | A0A151RJL2 | 0.0 | A0A151RJL2_CAJCA; Myb family transcription factor APL | ||||
STRING | GLYMA03G41040.3 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1512 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G29000.2 | 2e-94 | G2-like family protein |
Publications ? help Back to Top | |||
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