PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_34109
Common NameKK1_037147
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family ARF
Protein Properties Length: 578aa    MW: 65000.9 Da    PI: 8.4557
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_34109genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.61.2e-232103199
                    EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                    f+k+lt  d++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F   + +++
  C.cajan_34109   2 FCKTLTALDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVNQKNLVSGDAVLFL--RGENG 94 
                    99****************************963.3445679************************************************..44999 PP

                    ..EEEEE-S CS
             B3  91 elvvkvfrk 99 
                    el+++++r+
  C.cajan_34109  95 ELRLGIRRA 103
                    99****996 PP
2Auxin_resp120.31.5e-39128210182
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 
                    +a+a+s ks+F+v+Y+Pras+++Fvv+++k++k++k++v++G+Rfkm+fe+++s+err+ sG+v+g+sdldp++Wp+SkWr+L
  C.cajan_34109 128 VANAISAKSMFHVFYSPRASHADFVVPYQKYVKSIKNPVTIGTRFKMKFEMDESPERRCtSGLVTGMSDLDPYKWPKSKWRCL 210
                    689********************************************************9**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-381113IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-411114IPR015300DNA-binding pseudobarrel domain
CDDcd100179.47E-221102No hitNo description
PfamPF023621.3E-212103IPR003340B3 DNA binding domain
PROSITE profilePS5086313.0422104IPR003340B3 DNA binding domain
SMARTSM010192.1E-232104IPR003340B3 DNA binding domain
PfamPF065071.0E-33128210IPR010525Auxin response factor
PROSITE profilePS5174521.254450532IPR000270PB1 domain
SuperFamilySSF542772.7E-10453530No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MFCKTLTALD TSTHGGFSVP RRAAEDCFPP LDYKQQRPSQ ELVAKDLHGV EWKFRHIYRG  60
QPRRHLLTTG WSIFVNQKNL VSGDAVLFLR GENGELRLGI RRAARPRNGL PESIVGSQSY  120
YPNFLSSVAN AISAKSMFHV FYSPRASHAD FVVPYQKYVK SIKNPVTIGT RFKMKFEMDE  180
SPERRCTSGL VTGMSDLDPY KWPKSKWRCL MVRWDEDIEI NHQDRVSPWE IDPSASLPPL  240
SIQSSRRLKK LRPGLQAASP SHLITVGGSG FMDSEESVRS SKVLQGQENT SFMSLYYGCQ  300
EICPFRSLTE KVDLNFGAWG KPNVNCTNYN LHQATKPNFH SLGPEVIQTA YYPYGDIHKA  360
GQGSNMLYSK PTNVPFNIPS TQPGMMRNEV GRSDVTIPNE QKLQDNIPGA ANMRIPNDDN  420
LKGKVNACKL FGFPLSGETT TQTLQNSAKR SCTKVHKQGS LVGRAIDLSR LSSYNDLLIE  480
LERLFGMEGL LRDPNKGWRI LYTDSENDIM VVGDDPWHEF CDVVSKIHIH TQEEVEKMTI  540
GMMNDDTQSC LEQAPMVMEA SKSSSVGQPD SSPTVIRM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A3e-872233124354Auxin response factor 1
4ldw_A3e-872233124354Auxin response factor 1
4ldw_B3e-872233124354Auxin response factor 1
4ldx_A4e-872233124354Auxin response factor 1
4ldx_B4e-872233124354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_34109
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ6172711e-177FJ617271.1 Lotus japonicus auxin response factor 4 (ARF4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020240209.10.0auxin response factor 4 isoform X1
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLA0A151RGB20.0A0A151RGB2_CAJCA; Auxin response factor
STRINGGLYMA13G40310.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52363252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]