PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_33812 | ||||||||
Common Name | KK1_036736, KK1_036738, KK1_036739 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | bHLH | ||||||||
Protein Properties | Length: 76aa MW: 8519.05 Da PI: 10.0574 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.5 | 6.6e-10 | 3 | 46 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ r RR++i ++ +eL +l+P +K++ a++L A +Y+k+Lq C.cajan_33812 3 IAARERRKKISEKTQELGKLVPGG-----PKMNTADMLHAAAKYVKYLQ 46 56799*****************95.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.811 | 1 | 45 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.2E-10 | 2 | 51 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.85E-8 | 2 | 49 | No hit | No description |
SuperFamily | SSF47459 | 6.94E-13 | 3 | 55 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-12 | 4 | 53 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.2E-7 | 4 | 46 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016787 | Molecular Function | hydrolase activity | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 76 aa Download sequence Send to blast |
QSIAARERRK KISEKTQELG KLVPGGPKMN TADMLHAAAK YVKYLQAQVG MLELMISFEV 60 TFNLLSLVFD LVTNHV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_33812 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 4e-48 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020239913.1 | 6e-34 | transcription factor bHLH53 | ||||
Refseq | XP_020239915.1 | 6e-34 | transcription factor bHLH53 | ||||
Refseq | XP_020239916.1 | 6e-34 | transcription factor bHLH53 | ||||
Swissprot | Q9SA82 | 2e-16 | BH052_ARATH; Transcription factor bHLH52 | ||||
TrEMBL | A0A151RH15 | 8e-49 | A0A151RH15_CAJCA; Transcription factor bHLH52 (Fragment) | ||||
STRING | AES84889 | 4e-27 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3459 | 30 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30670.1 | 9e-19 | bHLH family protein |
Publications ? help Back to Top | |||
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