PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_33691

Common Name

KK1_036889

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

G2-like

Protein Properties

Length: 76aa MW: 8410.78 Da PI: 7.6335

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_33691	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	93.9	1.3e-29	19	69	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 kprl+Wt +LHerF+eav++LGG++kAtPktil+lm+++gLtl h+kSHLQ C.cajan_33691 19 KPRLKWTLDLHERFIEAVNHLGGADKATPKTILKLMGIPGLTLCHLKSHLQ 69 79************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.0E-26	17	69	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.35E-15	18	71	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.3E-22	19	71	IPR006447	Myb domain, plants
Pfam	PF00249	4.0E-8	21	69	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 76 aa Download sequence Send to blast
MHEGNGTGDL TLVLSTDAKP RLKWTLDLHE RFIEAVNHLG GADKATPKTI LKLMGIPGLT 60 LCHLKSHLQV TCYFNE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-19	19	69	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-19	19	69	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	6e-19	19	69	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-19	19	69	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-19	19	69	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-19	19	69	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-19	19	69	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-19	19	69	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-19	19	69	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-19	19	69	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-19	19	69	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-19	19	69	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:12008900}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_33691

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	4e-42	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029124768.1	4e-44	myb-related protein 2
Swissprot	Q9FK47	3e-33	PHLA_ARATH; Myb-related protein 1
TrEMBL	A0A151RGQ7	6e-49	A0A151RGQ7_CAJCA; Myb family transcription factor APL
STRING	GLYMA19G05385.1	1e-35	(Glycine max)
STRING	XP_007151824.1	1e-33	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15413	9	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.3	9e-36	myb-related protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]