PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_33304
Common NameKK1_030871
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family TCP
Protein Properties Length: 356aa    MW: 39163.6 Da    PI: 9.0609
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_33304genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP102.85.6e-3252159289
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.........seceaesssssasnsssg 88 
                     g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++++++         s++++++   s+s+++++
  C.cajan_33304  52 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLNAAKHEIDELPPLPNIPSvnnftlgypSAVTSNEATTSHSQPNEQ 147
                    689*************************************************************77777653333332222222222222222222 PP

            TCP  89 ...........k 89 
                                
  C.cajan_33304 148 llninrsiqweG 159
                    444445444541 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.1E-2954180IPR005333Transcription factor, TCP
PROSITE profilePS5136931.33754112IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MIKSPKEADF SLKQEGHHSN SSDHEKAKAS SSSAAQWPRL KDPRIVRVSR AFGGKDRHSK  60
VCTIRGLRDR RVRLSVPTAI QLYDLQDRLG LSQPSKVVDW LLNAAKHEID ELPPLPNIPS  120
VNNFTLGYPS AVTSNEATTS HSQPNEQLLN INRSIQWEGS SQNSFWKLKP KEVSGEMVSP  180
EKALSWINRS EEDRQGSNNE GPGTANVIPN NLSPRASHPS LMGLLNTMPH GYQWEPSGGD  240
VSHHQLGNNG FSNQTDTHGI NVVPFPTSAL SLSTGNSQIL LCPPGATQPY FSSHVTAMDM  300
DPRQINHYQM LSSASQNPLT SSLNHSFSLA MMTHRPLNSP NSSKSPSLKD QDFPSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1859113155Putative transcription factor PCF6
5zkt_B3e-1859113155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_33304
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029130491.10.0transcription factor TCP13
RefseqXP_029130492.10.0transcription factor TCP13
TrEMBLA0A151RY710.0A0A151RY71_CAJCA; Transcription factor TCP13
STRINGGLYMA18G50371.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.13e-46plastid transcription factor 1