PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_33304 | ||||||||
Common Name | KK1_030871 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | TCP | ||||||||
Protein Properties | Length: 356aa MW: 39163.6 Da PI: 9.0609 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 102.8 | 5.6e-32 | 52 | 159 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.........seceaesssssasnsssg 88 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++++++ s++++++ s+s+++++ C.cajan_33304 52 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLNAAKHEIDELPPLPNIPSvnnftlgypSAVTSNEATTSHSQPNEQ 147 689*************************************************************77777653333332222222222222222222 PP TCP 89 ...........k 89 C.cajan_33304 148 llninrsiqweG 159 444445444541 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.1E-29 | 54 | 180 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.337 | 54 | 112 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MIKSPKEADF SLKQEGHHSN SSDHEKAKAS SSSAAQWPRL KDPRIVRVSR AFGGKDRHSK 60 VCTIRGLRDR RVRLSVPTAI QLYDLQDRLG LSQPSKVVDW LLNAAKHEID ELPPLPNIPS 120 VNNFTLGYPS AVTSNEATTS HSQPNEQLLN INRSIQWEGS SQNSFWKLKP KEVSGEMVSP 180 EKALSWINRS EEDRQGSNNE GPGTANVIPN NLSPRASHPS LMGLLNTMPH GYQWEPSGGD 240 VSHHQLGNNG FSNQTDTHGI NVVPFPTSAL SLSTGNSQIL LCPPGATQPY FSSHVTAMDM 300 DPRQINHYQM LSSASQNPLT SSLNHSFSLA MMTHRPLNSP NSSKSPSLKD QDFPSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-18 | 59 | 113 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-18 | 59 | 113 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_33304 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029130491.1 | 0.0 | transcription factor TCP13 | ||||
Refseq | XP_029130492.1 | 0.0 | transcription factor TCP13 | ||||
TrEMBL | A0A151RY71 | 0.0 | A0A151RY71_CAJCA; Transcription factor TCP13 | ||||
STRING | GLYMA18G50371.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 3e-46 | plastid transcription factor 1 |