PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_32922
Common NameKK1_037592
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GRAS
Protein Properties Length: 396aa    MW: 45212.2 Da    PI: 6.5114
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_32922genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS396.92.1e-121143922373
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                    ++lL++cA++v+sg+ ++a+  L+ +s+++sp+g+++qR+++yf eAL  r+ ++ +++yk+++ps+ts   sse + ++k+f+e++P+lkfs+l+
  C.cajan_32922  14 ISLLIDCAKCVASGSIKNADIGLEYISHISSPEGNAVQRMVTYFSEALGYRIIKHLPGVYKSIHPSRTS--LSSEDILVQKYFYELCPFLKFSYLI 107
                    579************************************************************999998..79*********************** PP

           GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                    +NqaI ea+ege+ vHiiD+   +++QW+ Ll ++ +R++gpp+l+iTg+++    +ke l +++  L   A +l+ pf+f + v+++led+++e+
  C.cajan_32922 108 TNQAIIEAMEGEQVVHIIDLHCCEPAQWIDLLLTFKNRQGGPPHLKITGIHE----KKEVLDQMNFHLITEAGNLDFPFQFYP-VVSKLEDVDFEK 198
                    ****************************************************....9**************************.799********* PP

           GRAS 194 LrvkpgEalaVnlvlqlhrll...................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                    L vk+g+a+a+ +vlqlh+ll                     s     +   +L+ +++l+Pk+vv++eqe+++n++s+ler+ +al++ysalfd+
  C.cajan_32922 199 LPVKTGDAIAITSVLQLHSLLateedmagnpdsalsplslGASP----KMGIFLNDMRKLKPKLVVITEQESNLNGSSLLERVDRALYFYSALFDC 290
                    *******************************9997754444444....4566******************************************** PP

           GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                    l++++ r+s er+k+E +l+g++i+n++aceg +r+erhe+lekW +rle+aGF +vpls++   +ak ll++++++ y+  ee+++l+ +W+drp
  C.cajan_32922 291 LDSTVMRTSVERQKLESMLFGEQIKNIIACEGVDRKERHEKLEKWIQRLEMAGFVKVPLSYNGRIEAKNLLQRYSNK-YKFREENDCLFVCWSDRP 385
                    ***************************************************************************66.****************** PP

           GRAS 367 LvsvSaW 373
                    L+svSaW
  C.cajan_32922 386 LFSVSAW 392
                    ******* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.6251374IPR005202Transcription factor GRAS
PfamPF035147.4E-11914392IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MRELRWDSQG LNPISLLIDC AKCVASGSIK NADIGLEYIS HISSPEGNAV QRMVTYFSEA  60
LGYRIIKHLP GVYKSIHPSR TSLSSEDILV QKYFYELCPF LKFSYLITNQ AIIEAMEGEQ  120
VVHIIDLHCC EPAQWIDLLL TFKNRQGGPP HLKITGIHEK KEVLDQMNFH LITEAGNLDF  180
PFQFYPVVSK LEDVDFEKLP VKTGDAIAIT SVLQLHSLLA TEEDMAGNPD SALSPLSLGA  240
SPKMGIFLND MRKLKPKLVV ITEQESNLNG SSLLERVDRA LYFYSALFDC LDSTVMRTSV  300
ERQKLESMLF GEQIKNIIAC EGVDRKERHE KLEKWIQRLE MAGFVKVPLS YNGRIEAKNL  360
LQRYSNKYKF REENDCLFVC WSDRPLFSVS AWSFRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6013957381Protein SCARECROW
5b3h_A1e-6013956380Protein SCARECROW
5b3h_D1e-6013956380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_32922
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007149009.10.0hypothetical protein PHAVU_005G032900g
SwissprotQ9LPR81e-143SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A151RF170.0A0A151RF17_CAJCA; Scarecrow-like protein 3
STRINGXP_007149009.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145191017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-144scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]