PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_32688

Common Name

KK1_033583

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

GRAS

Protein Properties

Length: 617aa MW: 70340.5 Da PI: 7.0191

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_32688	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	44.5	2.5e-14	284	349	1	66
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalpp 66 l++lL+ cA+ v+++d + a++lL+r++++++ gd +qRla+ f+ +L+arla+++s++yk l C.cajan_32688 284 LRTLLVLCAQTVAADDYKGAHELLKRIRQHSNLFGDGNQRLAHIFADGLEARLAGTGSQIYKGLVK 349 5789*********************************************************98855 PP
2	GRAS	261.3	3.4e-80	348	615	106	374
GRAS 106 vegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199 v+++ r+H+iDf+i +G+QWp+L+q L++ +g +lRiTg++ p++g +e++ etg+rLa +Ae+++vpfe+n+ +ak++e+++leeL+++++ C.cajan_32688 348 VKNSARLHVIDFGILYGFQWPTLIQRLSATFGG--KLRITGIDFPQPGfrPAERIIETGRRLAAYAESFKVPFEYNA-IAKKWETIQLEELKIDRD 440 68899**********************8888..9*******9*************************.7************* PP GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 E l+V + ++ +++ldesv ++s+r+++L+lv++++P+++++ + n++ F++rf eal +ys+lfd+le+ +pre+ er+ +E+e++gre+ C.cajan_32688 441 EYLVVTCFYRGKNVLDESVVVDSPRNKFLSLVRKINPDLFIHGITNGAFNAPFFVTRFREALFHYSSLFDMLETIVPREDWERMLIEKEIFGREAL 536 ******************************************************************************************** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 nv+aceg er+er et+++W++r+ +aGF + +++ + +k a +r+ + + + ++e+s++l++gWk+r ++++S+W+ C.cajan_32688 537 NVIACEGCERVERPETYRQWQARILRAGFLQQSFERELVKRAIEKVRTSYHKDFVIDEDSQWLLQGWKGRIVYALSCWK 615 **********************************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	40.843	258	595	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.2E-77	348	615	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 617 aa Download sequence Send to blast
MIMDPRFCGF NGSHNEIRLG NQSLPILQNQ RFENGFFDQS REFGYLQSNL VPANNIPSSS 60 VLTHEEEPSP EDCEFSDAIL SYISQILMEE DMEDKTCMLK DSLDLQIAEK SFYEVIGEKY 120 PSSSLGNPSP VDPYDGGGDN TLSDNYVSCS YNDGDLSSIF TNNSLRRNLG EPPNLNFQGN 180 NSISKLSYSS SNRRKHHHRE EGDVEENRSS KQAAIFSEPT LRTTMTDIIL LYSLGDGKKH 240 YIARREALQI KNDKIVLSNG KSKASNSGKG RGKKHNGKKE VVDLRTLLVL CAQTVAADDY 300 KGAHELLKRI RQHSNLFGDG NQRLAHIFAD GLEARLAGTG SQIYKGLVKN SARLHVIDFG 360 ILYGFQWPTL IQRLSATFGG KLRITGIDFP QPGFRPAERI IETGRRLAAY AESFKVPFEY 420 NAIAKKWETI QLEELKIDRD EYLVVTCFYR GKNVLDESVV VDSPRNKFLS LVRKINPDLF 480 IHGITNGAFN APFFVTRFRE ALFHYSSLFD MLETIVPRED WERMLIEKEI FGREALNVIA 540 CEGCERVERP ETYRQWQARI LRAGFLQQSF ERELVKRAIE KVRTSYHKDF VIDEDSQWLL 600 QGWKGRIVYA LSCWKPA

Sequence ? help Back to Top

Protein Sequence Length: 617 aa Download sequence Send to blast

MIMDPRFCGF NGSHNEIRLG NQSLPILQNQ RFENGFFDQS REFGYLQSNL VPANNIPSSS  60
VLTHEEEPSP EDCEFSDAIL SYISQILMEE DMEDKTCMLK DSLDLQIAEK SFYEVIGEKY  120
PSSSLGNPSP VDPYDGGGDN TLSDNYVSCS YNDGDLSSIF TNNSLRRNLG EPPNLNFQGN  180
NSISKLSYSS SNRRKHHHRE EGDVEENRSS KQAAIFSEPT LRTTMTDIIL LYSLGDGKKH  240
YIARREALQI KNDKIVLSNG KSKASNSGKG RGKKHNGKKE VVDLRTLLVL CAQTVAADDY  300
KGAHELLKRI RQHSNLFGDG NQRLAHIFAD GLEARLAGTG SQIYKGLVKN SARLHVIDFG  360
ILYGFQWPTL IQRLSATFGG KLRITGIDFP QPGFRPAERI IETGRRLAAY AESFKVPFEY  420
NAIAKKWETI QLEELKIDRD EYLVVTCFYR GKNVLDESVV VDSPRNKFLS LVRKINPDLF  480
IHGITNGAFN APFFVTRFRE ALFHYSSLFD MLETIVPRED WERMLIEKEI FGREALNVIA  540
CEGCERVERP ETYRQWQARI LRAGFLQQSF ERELVKRAIE KVRTSYHKDF VIDEDSQWLL  600
QGWKGRIVYA LSCWKPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	5e-28	288	615	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_32688

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020237276.1	0.0	scarecrow-like protein 9
Refseq	XP_020237278.1	0.0	scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A151RQW1	0.0	A0A151RQW1_CAJCA; Scarecrow-like protein 9
STRING	GLYMA07G15950.3	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein