PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_32614
Common NameKK1_031917
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GRAS
Protein Properties Length: 685aa    MW: 76231.4 Da    PI: 5.8023
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_32614genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS325.11.4e-993296843374
           GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                    ++L++ Ae +++g+   aq +Larl+++ sp g+p+qR+a+y++eAL + l++      +a +  + s+ + + ++ a+k fse+sP+l+f+++t 
  C.cajan_32614 329 DQLYKTAELIEAGNPVHAQGILARLNHQLSPIGKPFQRAAFYMKEALMSLLHS------NAHNFMAFSPITFIFKIGAYKSFSEISPLLQFANFTS 418
                    689*************************************************9......5555555555569************************ PP

           GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                    Nqa+ eave+ +r+H++Dfdi+ G+QW +++q+La R++g+psl++T+++sp++ ++ el+ t+e+L+++A+ ++v+fefnvl  ++l++ +   L
  C.cajan_32614 419 NQALIEAVERFDRIHVVDFDIGFGVQWSSFMQELALRSSGAPSLKLTAIVSPSTCDEVELNFTRENLNQYAKDINVSFEFNVLSIESLNSPSCPLL 514
                    ***********************************************************************************9999999999999 PP

           GRAS 195 .rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                     ++  +Ea+aVn+ ++ ++ +      +s  ++vL++vk+l+Pkvvv  ++++d+ + ++ + +++ l++ysal++sl+a    + +  +k+Er++
  C.cajan_32614 515 gQFFDNEAIAVNMPVSCFTNY------PSLFPSVLHFVKQLRPKVVVTLDRNCDRIDVPLPTNVVHVLQCYSALLESLDAV-NVNLDVLQKIERHF 603
                    66778**********999888......555568*********************************************665.3466999******* PP

           GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    ++++i+++v   + +    +e+l  Wr+ + ++GF+p ++s+++++qa++l+++ +++g++ve +  slvl+W++++L+svS Wr
  C.cajan_32614 604 IQPAIKKIVLGHHPS----QEKLPPWRNLFIQSGFSPFTFSNFTEAQAECLVQRAPVRGFHVERKPSSLVLCWQRKELISVSTWR 684
                    ************999....9****************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.48301664IPR005202Transcription factor GRAS
PfamPF035144.8E-97329684IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MKAMPLPFEE FQGKGVLDFS DSFSVLLHHP QPKWTIDKED YCYVGSTEPT SVLDSRRSPS  60
PPTSSSTMSS SLGSNSTSKG GAGSGTSATT TTTPAPTPSE NHPPQEPSPD KCAIRMDDWE  120
GQDQSILRLI MGDVDDPSAG LSKLLQTTAC GSQGVDFNAG FGVVDQGFNM NMNMNMNMNM  180
NMVSESLVFT ANNPLMVSSS VSPGVFTSQQ QQQEFGVVDE KPQVINPHQF MVNQNQVQFS  240
ENPSFFVPLM YPQVQEQQVF PQHPAKRPMF DAIGHTNYQA PRMPLLDSGQ EQQQQQQQQQ  300
SLVMPSAKQQ KVSSAGDDAS HQLQQAIFDQ LYKTAELIEA GNPVHAQGIL ARLNHQLSPI  360
GKPFQRAAFY MKEALMSLLH SNAHNFMAFS PITFIFKIGA YKSFSEISPL LQFANFTSNQ  420
ALIEAVERFD RIHVVDFDIG FGVQWSSFMQ ELALRSSGAP SLKLTAIVSP STCDEVELNF  480
TRENLNQYAK DINVSFEFNV LSIESLNSPS CPLLGQFFDN EAIAVNMPVS CFTNYPSLFP  540
SVLHFVKQLR PKVVVTLDRN CDRIDVPLPT NVVHVLQCYS ALLESLDAVN VNLDVLQKIE  600
RHFIQPAIKK IVLGHHPSQE KLPPWRNLFI QSGFSPFTFS NFTEAQAECL VQRAPVRGFH  660
VERKPSSLVL CWQRKELISV STWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-3133368324377Protein SCARECROW
5b3h_D2e-3133368324377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_32614
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020235885.10.0scarecrow-like protein 6
SwissprotO813161e-128SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A151RV850.0A0A151RV85_CAJCA; Scarecrow-like protein 6
STRINGGLYMA03G03760.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-130GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]