PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_32322
Common NameKK1_032587
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family ZF-HD
Protein Properties Length: 263aa    MW: 28819.1 Da    PI: 7.5783
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_32322genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer110.21.1e-3451108359
    ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                     v YkeClkNhAa++Ggha+DGCgEfmps++++ +++++lkCaACgCHRnFHRre+++
  C.cajan_32322  51 VVSYKECLKNHAATIGGHALDGCGEFMPSSSTNpTDPRSLKCAACGCHRNFHRREPQD 108
                    689**************************99999********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.6E-2952106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.59454105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-2354114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.2E-3254105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.5E-29124192IPR009057Homeodomain-like
SuperFamilySSF466892.3E-18124191IPR009057Homeodomain-like
TIGRFAMsTIGR015653.2E-26130187IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDLTPTLDAD TKPTPPIHPT PKSLTFTSVT LKRHPTTTVG PPPPPPPSSM VVSYKECLKN  60
HAATIGGHAL DGCGEFMPSS STNPTDPRSL KCAACGCHRN FHRREPQDPS HSPSPILNFS  120
PVMMKSENPK KRYRTKFSKE QKEKMHSFSE KLGWRMQKGD DGLVQEFCND IGVPRGVFKV  180
WMHNNKNTLR KKPEGGNANA NANENENEIA NAPRDGSNAS GGGGFDSDIN NPYNPNSSNN  240
DIHMNEEEDG CVNAHVSLNE MSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-221311881875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_32322
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150349e-77AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020236384.12e-79zinc-finger homeodomain protein 10
SwissprotQ9LXG03e-52ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A151RTI40.0A0A151RTI4_CAJCA; ZF-HD homeobox protein At4g24660 family
STRINGXP_009788342.11e-65(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.12e-52homeobox protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]