PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_32168 | ||||||||
Common Name | KK1_034278 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | CO-like | ||||||||
Protein Properties | Length: 308aa MW: 33597.6 Da PI: 7.3528 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 27.6 | 5.9e-09 | 4 | 47 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 + C+ +++ ++l+C+ + +lC C ++ H H +v+ C.cajan_32168 4 KLCDSCKSATATLYCRPDAAFLCGACDSKVHAAnklasrHPRVT 47 68*****************************6567777787765 PP | |||||||
2 | zf-B_box | 23 | 1.7e-07 | 46 | 90 | 3 | 41 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 + C+ +e+ +++ C+ + lC C +H+ H++ p C.cajan_32168 46 VTLCEVCEQAPAHVTCKADAAALCLACDRDIHSAnplasrHERLP 90 578*****************************6688888898876 PP | |||||||
3 | CCT | 70.6 | 3.9e-24 | 251 | 294 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ C.cajan_32168 251 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 294 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.68 | 1 | 48 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 7.5E-14 | 1 | 48 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.3E-7 | 4 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.60E-9 | 5 | 48 | No hit | No description |
PROSITE profile | PS50119 | 10.608 | 44 | 91 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.8E-6 | 46 | 91 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 5.5E-9 | 49 | 91 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 4.4E-18 | 251 | 293 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.787 | 251 | 293 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MASKLCDSCK SATATLYCRP DAAFLCGACD SKVHAANKLA SRHPRVTLCE VCEQAPAHVT 60 CKADAAALCL ACDRDIHSAN PLASRHERLP VTPFFESVHS VKASSPINFL DEHRFFSDAD 120 ADVSTEEAEA ASWLLPNPKT DLNSSPYLFS ESDPVPYIDL DYAAVDPKAE QKSSGTADGV 180 VPVQSNFEPF TYGYKFNSTL SQSQSQMSQS VSSSSMEVGV VPDGNTMSEI SNCSYSKVAV 240 TATAQFSAAD REARVLRYRE KRKNRKFEKT IRYASRKAYA ETRPRIKGRF AKRTDADPLA 300 GYGVVPSC |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_32168 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093300 | 0.0 | BT093300.1 Soybean clone JCVI-FLGm-17I7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020237897.1 | 0.0 | zinc finger protein CONSTANS-LIKE 4 | ||||
Swissprot | Q940T9 | 1e-110 | COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4 | ||||
TrEMBL | A0A151RNV1 | 0.0 | A0A151RNV1_CAJCA; Zinc finger protein CONSTANS-LIKE 4 | ||||
STRING | XP_007136923.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1302 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24930.1 | 1e-101 | CONSTANS-like 4 |