PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_32036

Common Name

KK1_033985

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

bZIP

Protein Properties

Length: 381aa MW: 40865.9 Da PI: 6.5142

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_32036	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.1	1.2e-10	183	241	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l ++ l se+ C.cajan_32036 183 KRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLYQRDTTGLSSEN 241 9*****************************************99999888777776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.5E-16	179	243	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.818	181	244	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.74E-11	183	234	No hit	No description
Pfam	PF00170	3.7E-9	183	241	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.9E-10	183	237	No hit	No description
CDD	cd14703	2.66E-24	184	233	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MATQAQDPPS NPNPNSNATS ATPSSSFYMR SAAGNAISAA PIAGSGEHSH HRRAHSEVNF 60 RLPDDIMDLS PSDPFNGGSS TASFEEIGSE DDLFSTYIDV EKLGGGANGG ARGGNGSDQC 120 GYGNGAGTSG HNDGEKSPSA RPRHRHSSSV DGSTSTSMFG EIMEAKKAMP PDKLAELWNI 180 DPKRAKRILA NRQSAARSKE RKARYIQELE RKVQTLQTEA TTLSAQLTLY QRDTTGLSSE 240 NTELKLRLQA MEQQAQLRDA LNDALMKEVE RLKIATGEAL NHSESFNLGM HQMPFPGSTF 300 FSIPPHSGPP GHQNIQLPPF GHSPSSVSTH QLQQTNSHQI SDILQNDQLG RLQGLDISSK 360 GSPMVKSEGP SISANESSST F

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MATQAQDPPS NPNPNSNATS ATPSSSFYMR SAAGNAISAA PIAGSGEHSH HRRAHSEVNF  60
RLPDDIMDLS PSDPFNGGSS TASFEEIGSE DDLFSTYIDV EKLGGGANGG ARGGNGSDQC  120
GYGNGAGTSG HNDGEKSPSA RPRHRHSSSV DGSTSTSMFG EIMEAKKAMP PDKLAELWNI  180
DPKRAKRILA NRQSAARSKE RKARYIQELE RKVQTLQTEA TTLSAQLTLY QRDTTGLSSE  240
NTELKLRLQA MEQQAQLRDA LNDALMKEVE RLKIATGEAL NHSESFNLGM HQMPFPGSTF  300
FSIPPHSGPP GHQNIQLPPF GHSPSSVSTH QLQQTNSHQI SDILQNDQLG RLQGLDISSK  360
GSPMVKSEGP SISANESSST F

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_32036

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	1e-146	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020237620.1	0.0	transcription factor RF2b
Swissprot	Q6S4P4	1e-106	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A151RPP7	0.0	A0A151RPP7_CAJCA; Transcription factor RF2b
STRING	GLYMA18G05880.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06850.1	7e-92	basic leucine-zipper 52

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]