PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_31954
Common NameKK1_031529
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family TCP
Protein Properties Length: 319aa    MW: 34898.1 Da    PI: 7.1706
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_31954genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.11.9e-35641852112
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssasec...eaesssssasn 84 
                     g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a+ ai el+++          +s+ +       ++++   ++n
  C.cajan_31954  64 SGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAAEDAISELPSLnnpfpdtpkqQSDEK--RpsgFDDADADLQQN 157
                    689*************************************************************777776654311111..123423333333333 PP

            TCP  85 sssgkaaksaakskksqksaasalnlak 112
                    +s++ + +++a+s+ s++s+ s l+l+ 
  C.cajan_31954 158 QSQNVSLSKSACSSTSETSKGSGLSLSS 185
                    4444455555566666666665555544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-3765185IPR005333Transcription factor, TCP
PROSITE profilePS5136932.05766124IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEEDEIEAQA CKFPRVGNSR NEIGSSRGSE EEDGEQRRRS VGSTNHFQSS WHHSSRIIRV  60
SRASGGKDRH SKVMTSKGLR DRRVRLSVTT AIQFYDLQDR LGYDQPSKAV EWLIKAAEDA  120
ISELPSLNNP FPDTPKQQSD EKRPSGFDDA DADLQQNQSQ NVSLSKSACS STSETSKGSG  180
LSLSSSGLLV SSARTAQHQY ALPFSGGDQM QHFSFMSDHL NMPAMVTSSQ PQPSGGDYNL  240
NFSISNGYNR GTLQSNSPSF LPHLQRFQTI DGSSNIPFFI GAPASASASA SPTMDHHQPQ  300
FSPVFDGTRH SDHKGKGKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-2371125155Putative transcription factor PCF6
5zkt_B3e-2371125155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_31954
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-112AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020235566.11e-128transcription factor TCP2
RefseqXP_020235567.11e-128transcription factor TCP2
RefseqXP_020235568.11e-128transcription factor TCP2
TrEMBLA0A151RWA70.0A0A151RWA7_CAJCA; Transcription factor TCP2
STRINGGLYMA15G09910.23e-91(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40193156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.21e-45TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2