PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_31953 | ||||||||
Common Name | KK1_031528 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | TCP | ||||||||
Protein Properties | Length: 317aa MW: 34739.9 Da PI: 7.1706 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 114.2 | 1.8e-35 | 64 | 185 | 2 | 112 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssasec...eaesssssasn 84 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a+ ai el+++ +s+ + ++++ ++n C.cajan_31953 64 SGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAAEDAISELPSLnnpfpdtpkqQSDEK--RpsgFDDADADLQQN 157 689*************************************************************777776654311111..123423333333333 PP TCP 85 sssgkaaksaakskksqksaasalnlak 112 +s++ + +++a+s+ s++s+ s l+l+ C.cajan_31953 158 QSQNVSLSKSACSSTSETSKGSGLSLSS 185 4444455555566666666665555554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.1E-37 | 65 | 185 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.057 | 66 | 124 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MEEDEIEAQA CKFPRVGNSR NEIGSSRGSE EEDGEQRRRS VGSTNHFQSS WHHSSRIIRV 60 SRASGGKDRH SKVMTSKGLR DRRVRLSVTT AIQFYDLQDR LGYDQPSKAV EWLIKAAEDA 120 ISELPSLNNP FPDTPKQQSD EKRPSGFDDA DADLQQNQSQ NVSLSKSACS STSETSKGSG 180 LSLSSSGLLV SSARTAQHQY APPFSGGDQM QHFSFMSDHL NMPAMVTSSQ PQPSGGDYNL 240 NFSISNGYNR GTLQSNSPSF LPHLQRFQTI DGSSNIPFFI GAPASASASP TMDHHQLQFS 300 PVFDGTRHSD HKGKGKN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-23 | 71 | 125 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-23 | 71 | 125 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00006 | PBM | Transfer from 493022 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_31953 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 1e-112 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020235566.1 | 1e-128 | transcription factor TCP2 | ||||
Refseq | XP_020235567.1 | 1e-128 | transcription factor TCP2 | ||||
Refseq | XP_020235568.1 | 1e-128 | transcription factor TCP2 | ||||
TrEMBL | A0A151RWA3 | 0.0 | A0A151RWA3_CAJCA; Transcription factor TCP2 | ||||
STRING | GLYMA15G09910.2 | 2e-91 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4019 | 31 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 7e-46 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |