PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_31945
Common NameKK1_030697
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MIKC_MADS
Protein Properties Length: 240aa    MW: 27664.2 Da    PI: 9.9302
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_31945genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.45.9e-312473150
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                   krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fs++g+lyey+
  C.cajan_31945 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYA 73
                   79***********************************************8 PP
2K-box107.41.7e-35921884100
          K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                    s+ +s++ea+++ +qqe++kL+++i+ +q+ +Rh+lGe L+sLslkeL++Le +Lek+l+++Rs+K+e l++ +e +qk+e elq++n++Lr+k++
  C.cajan_31945  92 SNAESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALGSLSLKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKIA 187
                    444559****************************************************************************************98 PP

          K-box 100 e 100
                    e
  C.cajan_31945 188 E 188
                    6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.9E-411675IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.7961676IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.29E-321791IPR002100Transcription factor, MADS-box
CDDcd002651.34E-431793No hitNo description
PRINTSPR004041.1E-321838IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
PfamPF003192.1E-262572IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-323853IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-325374IPR002100Transcription factor, MADS-box
PfamPF014863.9E-2599186IPR002487Transcription factor, K-box
PROSITE profilePS5129714.446102192IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MDLPNQAQEG SSQKKMGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
VVFSTRGRLY EYANNSVRAT IERYKKACAA SSNAESVSEA NTQFYQQESS KLRRQIRDIQ  120
NLNRHILGEA LGSLSLKELK NLEGRLEKGL SRVRSRKHET LFADVEFMQK REIELQNHNN  180
YLRAKIAEHE RAQQQQSNMM QGTLCESLPS QSYDRNFFPV NLIASDQQYS RQDQTALQLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-201684169Myocyte-specific enhancer factor 2B
1tqe_Q2e-201684169Myocyte-specific enhancer factor 2B
1tqe_R2e-201684169Myocyte-specific enhancer factor 2B
1tqe_S2e-201684169Myocyte-specific enhancer factor 2B
5f28_A2e-201684169MEF2C
5f28_B2e-201684169MEF2C
5f28_C2e-201684169MEF2C
5f28_D2e-201684169MEF2C
6c9l_A2e-201684169Myocyte-specific enhancer factor 2B
6c9l_B2e-201684169Myocyte-specific enhancer factor 2B
6c9l_C2e-201684169Myocyte-specific enhancer factor 2B
6c9l_D2e-201684169Myocyte-specific enhancer factor 2B
6c9l_E2e-201684169Myocyte-specific enhancer factor 2B
6c9l_F2e-201684169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_31945
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2525640.0EU252564.1 Glycine max agamous-like 1 protein (AGL1L) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020234727.11e-177agamous-like MADS-box protein AGL1 isoform X1
RefseqXP_020234728.11e-177agamous-like MADS-box protein AGL1 isoform X2
SwissprotQ93XH41e-126MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBLA0A151RYP31e-176A0A151RYP3_CAJCA; Agamous-like MADS-box protein AGL1
STRINGXP_004513719.11e-160(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.11e-117MIKC_MADS family protein
Publications ? help Back to Top
  1. Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
    A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
    Plant Mol. Biol., 2001. 45(5): p. 541-53
    [PMID:11414613]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]