PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_31754

Common Name

KK1_034639

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

G2-like

Protein Properties

Length: 286aa MW: 31921 Da PI: 9.8119

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_31754	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.9	1.1e-33	46	100	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LH+rF+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl C.cajan_31754 46 KPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 100 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.489	43	103	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-31	44	101	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.08E-16	45	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.0E-23	46	101	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-9	48	99	IPR001005	SANT/Myb domain
Pfam	PF14379	1.1E-24	147	193	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MYHHHQHQGK NIHSSSRMPI PSERHMFLQT GNGSGDSGLV LSTDAKPRLK WTPDLHARFI 60 EAVNQLGGAD KATPKTVMKL MGIPGLTLYH LKSHLQKYRL SKNLHGQSNN VTHKITPNAS 120 TAERLSETNG SHMNKLSLGP QTNKDLHISE ALQMQIEVQR RLNEQLEVQR HLQLRIEAQG 180 KYLQSVLEKA QETLGRQNLG IVGLEAAKVQ LSELVSKVSS QCLNSTFSEL KKLQGFCPQQ 240 TQTNQPNDCS GDKSQSNAAR LDLNTHGDNE AATTCKQLDL NRFSWN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-20	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-20	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-20	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-20	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-20	45	102	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_31754

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT093552	0.0	BT093552.1 Soybean clone JCVI-FLGm-24O19 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020238153.1	0.0	myb-related protein 2 isoform X1
Refseq	XP_020238157.1	0.0	myb-related protein 2-like isoform X1
Swissprot	Q9SQQ9	1e-126	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A151RMZ2	0.0	A0A151RMZ2_CAJCA; Myb family transcription factor APL
STRING	GLYMA13G39290.2	1e-174	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3852	31	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-128	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]