PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_31567

Common Name

KK1_031381

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

MYB_related

Protein Properties

Length: 284aa MW: 30851.8 Da PI: 8.7943

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_31567	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.4	3.9e-14	73	117	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I+r k+Rt+ q+ s+ qky C.cajan_31567 73 PWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKY 117 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.519	66	122	IPR017930	Myb domain
SuperFamily	SSF46689	5.6E-17	68	122	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-16	69	120	IPR006447	Myb domain, plants
SMART	SM00717	4.6E-9	70	120	IPR001005	SANT/Myb domain
CDD	cd00167	1.07E-9	73	118	No hit	No description
Pfam	PF00249	2.2E-11	73	117	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-10	73	117	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MPHSAEFMLF GVRVVVYSIM NIVSVNNLSQ YDLPRDASAA AKDDAVVTAG YASADDAAPT 60 NSGKSRDRKR GIPWTEEEHK LFLVGLQKVG KGDWRGISRN YVKTRTPTQV ASHAQKYFLR 120 RTNLNRRRRR SSLFDITTVS VSTTPMEEGQ VQHQDDVSLL HPVYPVTPEG STMNGFPMMP 180 LYPKDVGSGV MSVQGGNPME TLTLGQGNVE QNGPSTKLVC TTPIVPDHKC STVSDITASL 240 SSFDPPTLSL GLSLSSSQRQ TSSRHSALHA LPCFNNGDSI ISVA

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_31567

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031190	0.0	KT031190.1 Glycine max clone HN_CCL_89 MYB/HD-like transcription factor (Glyma04g34720.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020235400.1	0.0	transcription factor MYB1R1
Swissprot	Q2V9B0	2e-62	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A151RWT5	0.0	A0A151RWT5_CAJCA; Myb-like protein J
STRING	GLYMA04G34720.1	1e-148	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4248	31	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74840.2	1e-46	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]