PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_31554
Common NameKK1_031368
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family E2F/DP
Protein Properties Length: 344aa    MW: 39116.1 Da    PI: 9.7635
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_31554genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP74.51.1e-231277171
        E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                   rk+ksL+ll+++fl+l++k++ + + l+++a +L    v  +rRRiYDi+NVLe+++++++++kn+++wkg
  C.cajan_31554 12 RKQKSLGLLCTNFLSLYNKEDVRSIGLDDAALRL---GV--ERRRIYDIVNVLESVGVLARRAKNQYTWKG 77
                   79*****************999************...**..****************************98 PP
2E2F_TDP77.51.3e-24143221171
        E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse...dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                    r+eksL lltq+f+kl+ +s+ +++tl+e+ak L+ +    +++k+RR+YDi+NVL+++nliek     ++k+++rw g
  C.cajan_31554 143 RREKSLALLTQNFVKLFICSNIEMITLDEAAKLLLGNahkIMRTKVRRLYDIANVLSSMNLIEKthatnTKKPAFRWLG 221
                    689*******************************99999999**************************99*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.5E-25878IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.0E-151175IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.5E-271277IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.1E-191377IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.1E-23140222IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.6E-29143221IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.09E-13145222IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.0E-19145221IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MSSSSTHHTY SRKQKSLGLL CTNFLSLYNK EDVRSIGLDD AALRLGVERR RIYDIVNVLE  60
SVGVLARRAK NQYTWKGFTA IPAALDEGFK ENPASFDGSN DSGKMSDDED EEETFPNLDT  120
ETQNDKEHPD SAAPAKSIKT ENRREKSLAL LTQNFVKLFI CSNIEMITLD EAAKLLLGNA  180
HKIMRTKVRR LYDIANVLSS MNLIEKTHAT NTKKPAFRWL GFRGKQRNES VDIVHNSNIK  240
EPRKRMFGSD ITNVVFKRNR VDLFMDDQNS KMQNQQEKMS HGAQPEKNNL EKSAKQTSKS  300
YQFGPFAPAY VPKVGTSENN SVKKEHNWDS LALVHRPQYQ NQGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A4e-37112103225Transcription factor E2F8
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Controls the timing of endocycle onset and inhibits endoreduplication. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15649366, ECO:0000269|PubMed:18787127}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_31554
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020235411.10.0E2F transcription factor-like E2FE isoform X2
SwissprotQ8LSZ41e-104E2FE_ARATH; E2F transcription factor-like E2FE
TrEMBLA0A151RWS50.0A0A151RWS5_CAJCA; Transcription factor E2F7
STRINGGLYMA06G19843.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36683366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.11e-108DP-E2F-like 1
Publications ? help Back to Top
  1. Chandran D, et al.
    Atypical E2F transcriptional repressor DEL1 acts at the intersection of plant growth and immunity by controlling the hormone salicylic acid.
    Cell Host Microbe, 2014. 15(4): p. 506-13
    [PMID:24721578]
  2. Wang Z, et al.
    Del1 Knockout Mice Developed More Severe Osteoarthritis Associated with Increased Susceptibility of Chondrocytes to Apoptosis.
    PLoS ONE, 2016. 11(8): p. e0160684
    [PMID:27505251]
  3. Heyman J,Polyn S,Eekhout T,De Veylder L
    Tissue-Specific Control of the Endocycle by the Anaphase Promoting Complex/Cyclosome Inhibitors UVI4 and DEL1.
    Plant Physiol., 2017. 175(1): p. 303-313
    [PMID:28698355]