PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_31328
Common NameKK1_030481
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family SBP
Protein Properties Length: 127aa    MW: 14790.2 Da    PI: 6.8628
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_31328genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP138.81.5e-4346122278
                    -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
            SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                    Cqv+gC+adls+ak yhrrhkvCe h+kap+vl+++++qrfCqqCsrfhelsefD++krsCrrrLa+hnerrrk+++
  C.cajan_31328  46 CQVDGCNADLSDAKPYHRRHKVCEYHAKAPAVLIADQHQRFCQQCSRFHELSEFDDSKRSCRRRLAGHNERRRKNAS 122
                    **************************************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0375752.1E-581127IPR017238Squamosa promoter-binding protein
Gene3DG3DSA:4.10.1100.105.7E-3739107IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.63343120IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.03E-4044124IPR004333Transcription factor, SBP-box
PfamPF031101.2E-3446119IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MNYKEEEEYE EEEEEESEGY GEDDRKKRVV TTKRGSKAGG SVPPSCQVDG CNADLSDAKP  60
YHRRHKVCEY HAKAPAVLIA DQHQRFCQQC SRFHELSEFD DSKRSCRRRL AGHNERRRKN  120
ASEYHGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-3638119384squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_31328
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150384e-68AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020234618.18e-90squamosa promoter-binding protein 1
SwissprotQ387412e-47SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLA0A151RZ834e-88A0A151RZ83_CAJCA; Squamosa promoter-binding protein 1
STRINGGLYMA13G31090.12e-71(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.12e-40squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]