PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_31192
Common NameKK1_030443
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 249aa    MW: 28169.4 Da    PI: 10.1351
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_31192genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.32.6e-111445132
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                     +g+WT+eEd++l+ +v+++G g+W++ +++ g
    C.cajan_31192 14 KGPWTPEEDKKLISYVEKHGHGNWRSFPAKAG 45
                     79**********************99888887 PP
2Myb_DNA-binding50.83.9e-1670113146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg ++ eEd+ +++++++lG++ W+ Ia++++ +Rt++++k++w++
    C.cajan_31192  70 RGDFSLEEDQTIIQLHALLGNK-WSIIAAHLP-KRTDNEIKNYWNT 113
                      899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.181956IPR017930Myb domain
SuperFamilySSF466892.95E-2811111IPR009057Homeodomain-like
SMARTSM007176.7E-51366IPR001005SANT/Myb domain
PfamPF002497.7E-101446IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-181571IPR009057Homeodomain-like
PROSITE profilePS5129425.4665119IPR017930Myb domain
SMARTSM007171.1E-1569117IPR001005SANT/Myb domain
PfamPF002493.4E-1570113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-2672120IPR009057Homeodomain-like
CDDcd001672.13E-1173115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGRMTCCEKV GLKKGPWTPE EDKKLISYVE KHGHGNWRSF PAKAGNTTSP YLSFNLLLRW  60
INYLKPDIKR GDFSLEEDQT IIQLHALLGN KWSIIAAHLP KRTDNEIKNY WNTNIKKRLI  120
RMGLDPITHK PMKPNTFEGY GDSHDHSKDS INMGHVAQWE SARVEAEARG SMLQVGSGSS  180
LLPRLFLSKI PTHQPLSTQH GTMYNMYALV LAINHDIRSS VSTLVSLSFP PLLPTLDNSR  240
TRKAHAVMS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-23121195108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_31192
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029130426.11e-166transcription factor MYB16
SwissprotQ9LE632e-74MY106_ARATH; Transcription factor MYB106
SwissprotQ9LXF12e-74MYB16_ARATH; Transcription factor MYB16
TrEMBLA0A151RZ770.0A0A151RZ77_CAJCA; Transcription factor MYB32
STRINGGLYMA02G12242.11e-121(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13536826
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.16e-77myb domain protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  4. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]